View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8075_low_1 (Length: 238)

Name: NF8075_low_1
Description: NF8075
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8075_low_1
NF8075_low_1
[»] chr2 (5 HSPs)
chr2 (1-222)||(34562833-34563054)
chr2 (1-102)||(34571777-34571878)
chr2 (3-222)||(34579092-34579314)
chr2 (3-222)||(34584841-34585063)
chr2 (133-222)||(34571624-34571713)
[»] chr8 (8 HSPs)
chr8 (17-222)||(41943686-41943894)
chr8 (15-222)||(25865440-25865650)
chr8 (20-92)||(26591913-26591985)
chr8 (22-68)||(38799242-38799288)
chr8 (22-68)||(38822229-38822275)
chr8 (145-222)||(43479852-43479929)
chr8 (144-218)||(44343873-44343949)
chr8 (21-65)||(43480012-43480056)
[»] chr4 (1 HSPs)
chr4 (18-78)||(24860289-24860349)
[»] chr5 (2 HSPs)
chr5 (22-78)||(12531239-12531295)
chr5 (22-78)||(12547324-12547380)
[»] chr1 (1 HSPs)
chr1 (169-221)||(7594438-7594490)


Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 34563054 - 34562833
Alignment:
Q  1 ttttcttctatcttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctc 100  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34563054 ttttcttctatttttgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctc 34562955  T
Q  101 gtaattataaaccaaagggcggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatct 200  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34562954 gtaattataaaccaaagggaggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatct 34562855  T
Q  201 tttgatccgtaagcttccattc 222  Q
    ||||||||||||||||||||||    
T  34562854 tttgatccgtaagcttccattc 34562833  T

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Target: chr2; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 34571878 - 34571777
Alignment:
Q  1 ttttcttctatcttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctc 100  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||  |||||||||||| ||||||    
T  34571878 ttttcttctattttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaaggaaggaactcgccacaaaggttgctc 34571779  T
Q  101 gt 102  Q
    ||    
T  34571778 gt 34571777  T

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Target: chr2; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 34579314 - 34579092
Alignment:
Q  3 ttcttctatcttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgt 102  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| ||||   ||||||||||||  ||||||     
T  34579314 ttcttcttttttcgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcga 34579215  T
Q  103 aattat---aaaccaaagggcggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatc 199  Q
    || | |     | |||  |||||| | ||||  |||| ||||| |||||||||||||||||||||||| ||||||||||| || |||||| || |||| |    
T  34579214 aaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaac 34579115  T
Q  200 ttttgatccgtaagcttccattc 222  Q
    ||||||| ||||| |||||||||    
T  34579114 ttttgattcgtaaacttccattc 34579092  T

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Target: chr2; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 3 - 222
Target Start/End: Complemental strand, 34585063 - 34584841
Alignment:
Q  3 ttcttctatcttcgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgt 102  Q
    ||||||| | ||||||||||||||||||||||||||||||||||||| |||||||  ||| |||||||||| ||||   ||||||||||||  ||||||     
T  34585063 ttcttcttttttcgattcaatggcgcgtacaaagcaaactgctcgcagatccacccttggtaaggcaccaaggaagcaactcgccacaaaggctgctcga 34584964  T
Q  103 aattat---aaaccaaagggcggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatc 199  Q
    || | |     | |||  |||||| | ||||  |||| ||||| |||||||||||||||||||||||| ||||||||||| || |||||| || |||| |    
T  34584963 aaatctgtgccaacaaccggcggaatcaagaagcctcatcgttatcgtcctggaacagttgctcttcgtgagatacgtaagtatcagaagggtaccgaac 34584864  T
Q  200 ttttgatccgtaagcttccattc 222  Q
    ||||||| ||||| |||||||||    
T  34584863 ttttgattcgtaaacttccattc 34584841  T

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Target: chr2; HSP #5
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 133 - 222
Target Start/End: Complemental strand, 34571713 - 34571624
Alignment:
Q  133 cctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattc 222  Q
    |||| ||||||||||   ||||||||||||||||| ||||||||||| || ||||||||| |||| |||||||||||||| |||||||||    
T  34571713 cctcatcgttttcgttgcggaacagttgctcttcgtgagatacgtaagtatcagaagagtaccgaacttttgatccgtaaacttccattc 34571624  T

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Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 17 - 222
Target Start/End: Original strand, 41943686 - 41943894
Alignment:
Q  17 attcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaacc--- 113  Q
    |||||||||| ||||| ||||||||||||||||||||||||||||||||||| |||| ||||   || ||||| |||  |||||| || | |   ||       
T  41943686 attcaatggctcgtactaagcaaactgctcgcaaatccaccggtggcaaggctccaaggaagcaactggccaccaaggctgctcgcaaatctgctcctac 41943785  T
Q  114 aaagggcggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaag 213  Q
    ||  || ||| | |||| ||||| ||| | ||||||||| || ||||| ||||| ||||| |||||||||||||||||| | ||||||||||||||||||    
T  41943786 aaccggtggagtcaagaaacctcatcgctatcgtcctggtaccgttgcacttcgtgagatccgtaaataccagaagagtactgatcttttgatccgtaag 41943885  T
Q  214 cttccattc 222  Q
    |||||||||    
T  41943886 cttccattc 41943894  T

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Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 222
Target Start/End: Original strand, 25865440 - 25865650
Alignment:
Q  15 cgattcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaagattgctcgtaattataaacca 114  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| ||||   ||||| || ||   |||  | || | |   |||    
T  25865440 cgattcaatggctcgtacgaagcaaactgctcgcaaatccaccggcggcaaggcaccaaggaagcaactcgcgaccaaagctgcaaggaaatctgctcca 25865539  T
Q  115 aag---ggcggacttaagagacctcgtcgttttcgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgta 211  Q
    |     |||||| | ||||  |||| ||||| |||||||||||| ||||||||||| ||||| ||||| || ||||||||| | || |||||||||||||    
T  25865540 accaccggcggagtgaagaagcctcatcgttatcgtcctggaaccgttgctcttcgtgagatccgtaagtatcagaagagtactgagcttttgatccgta 25865639  T
Q  212 agcttccattc 222  Q
    |||||||||||    
T  25865640 agcttccattc 25865650  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 92
Target Start/End: Original strand, 26591913 - 26591985
Alignment:
Q  20 caatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaaggtgctcgccacaaa 92  Q
    ||||||| ||||| ||||||||||| ||||| |||||||| ||||| ||||||| ||||  |||||| |||||    
T  26591913 caatggcacgtactaagcaaactgcacgcaagtccaccggcggcaaagcaccaaggaagcagctcgcaacaaa 26591985  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Original strand, 38799242 - 38799288
Alignment:
Q  22 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggc 68  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  38799242 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggc 38799288  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 38822275 - 38822229
Alignment:
Q  22 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggc 68  Q
    ||||| ||||| |||||||| ||||||||||||||||| ||||||||    
T  38822275 atggcacgtaccaagcaaacagctcgcaaatccaccggcggcaaggc 38822229  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 222
Target Start/End: Complemental strand, 43479929 - 43479852
Alignment:
Q  145 cgtcctggaacagttgctcttcgcgagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccattc 222  Q
    ||||||||||| ||||||||||| ||||| || || || ||||||||| |||| ||| | ||| | ||||||||||||    
T  43479929 cgtcctggaactgttgctcttcgtgagatccgcaagtatcagaagagtaccgagcttctcatcaggaagcttccattc 43479852  T

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Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 218
Target Start/End: Original strand, 44343873 - 44343949
Alignment:
Q  144 tcgtcctggaacagttgctcttcgcgagatac--gtaaataccagaagagttccgatcttttgatccgtaagcttcc 218  Q
    |||||||||||| ||||||||||| |||| |   |||| || ||||||||| || | ||||||||||||||||||||    
T  44343873 tcgtcctggaaccgttgctcttcgtgagagatctgtaagtatcagaagagtaccaaacttttgatccgtaagcttcc 44343949  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 65
Target Start/End: Complemental strand, 43480056 - 43480012
Alignment:
Q  21 aatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaa 65  Q
    |||||| ||||| || ||||| |||||||||||||||||||||||    
T  43480056 aatggctcgtaccaaacaaaccgctcgcaaatccaccggtggcaa 43480012  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 78
Target Start/End: Original strand, 24860289 - 24860349
Alignment:
Q  18 ttcaatggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 78  Q
    ||||||||| |||||||||||||| ||||||||||||||||| || || ||||||| ||||    
T  24860289 ttcaatggctcgtacaaagcaaacagctcgcaaatccaccggaggaaaagcaccaaggaag 24860349  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Original strand, 12531239 - 12531295
Alignment:
Q  22 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 78  Q
    ||||| ||||| |||||||| ||||||||||||||||| || || ||||||| ||||    
T  12531239 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaag 12531295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 78
Target Start/End: Complemental strand, 12547380 - 12547324
Alignment:
Q  22 atggcgcgtacaaagcaaactgctcgcaaatccaccggtggcaaggcaccaacgaag 78  Q
    ||||| ||||| |||||||| ||||||||||||||||| || || ||||||| ||||    
T  12547380 atggctcgtaccaagcaaacagctcgcaaatccaccggcggaaaagcaccaaggaag 12547324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 221
Target Start/End: Complemental strand, 7594490 - 7594438
Alignment:
Q  169 gagatacgtaaataccagaagagttccgatcttttgatccgtaagcttccatt 221  Q
    ||||| ||||| |||||||||||| | || ||||||||||| |||||||||||    
T  7594490 gagatccgtaagtaccagaagagtactgagcttttgatccgcaagcttccatt 7594438  T

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