View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_high_6 (Length: 341)
Name: NF8076_high_6
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_high_6 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 10 - 341
Target Start/End: Original strand, 52798556 - 52798887
Alignment:
| Q |
10 |
tagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatggtgtgtga |
109 |
Q |
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| T |
52798556 |
tagcagagactaagaaaatagactcaagttattgaaaaccaatttgattttatgttagagagatcgaccatggaagctatctacttgctatagcgtgtga |
52798655 |
T |
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| Q |
110 |
tgaaacaatatcagatggacnnnnnnnnctacacttagtttttattaatatggagaaaacaattgatagagcatcaagagagatttgtggaaaatcatat |
209 |
Q |
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| T |
52798656 |
tgaaacgatatcagatggacaaaaaatactacacttagtttttattaatatggagaaaacaattgatagatcaccaagagagatttgtggaaaatcatat |
52798755 |
T |
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| Q |
210 |
agaagaaagaggttggtgttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagagag |
309 |
Q |
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| T |
52798756 |
agaagaaagaggttagggttgatatttatttattaaactacaaatcaataagtggaaataagtacaaatgatacttgttatgttacgggtataaagaggg |
52798855 |
T |
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| Q |
310 |
ccgactcaattattctatgtgttgtccaataa |
341 |
Q |
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| T |
52798856 |
ccgactcaattattctatgtgttgtccaataa |
52798887 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 46 - 95
Target Start/End: Complemental strand, 50630495 - 50630446
Alignment:
| Q |
46 |
aaccaatttgattttatgttagagagatcgaccatggaagctatctactt |
95 |
Q |
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| T |
50630495 |
aaccaatttgattttatgcttgcgaggtcgaccatggaagcaatctactt |
50630446 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 13148398 - 13148445
Alignment:
| Q |
16 |
agactaagaaaatagactcaagttattgaaaaccaatttgattttatg |
63 |
Q |
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| T |
13148398 |
agactaagaaaagagactcgagttatcgataaccaatttgattttatg |
13148445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 15 - 63
Target Start/End: Original strand, 20499184 - 20499232
Alignment:
| Q |
15 |
gagactaagaaaatagactcaagttattgaaaaccaatttgattttatg |
63 |
Q |
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| T |
20499184 |
gagactaagaaaataagcgcaagttattgataaccaatttggttttatg |
20499232 |
T |
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