View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_low_10 (Length: 288)
Name: NF8076_low_10
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 17 - 279
Target Start/End: Complemental strand, 34747494 - 34747229
Alignment:
| Q |
17 |
agacttgacaaatagaactagcaatatgctcatttccaaagcaacnnnnnnntagaaatattcatacaagtactacagaaagnnnnnnnnn---tgcata |
113 |
Q |
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||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||||||||| |||||| |
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| T |
34747494 |
agacttgacaaatagaaatagcaatatgctcatttccaaaacaacaaaaaaatagaaatattcatacaagtactacagaaagaaaaaaaaaacatgcata |
34747395 |
T |
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| Q |
114 |
caagaatcttcaaattaaccaagtactacaatttagcacagccatgcttgctcactcatgcccttcatgagaaagaagactcactcaaacaaagtaattt |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34747394 |
caagaatcttcaaattaaccaagtactacaatttagcacagccatgcttgctcactcatgtccttcatgagaaagaagactcactcaaacaaagtaattt |
34747295 |
T |
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| Q |
214 |
gaaagataagtagattatagtataaaccatacataaccaacttggtcaagaaagtgcgtgtgtgcg |
279 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||| ||||| |
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| T |
34747294 |
gaaagataagtagattatagtataaaccatacataaccaacttggtcaaaaaagtgtgtgcgtgcg |
34747229 |
T |
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