View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8076_low_11 (Length: 281)
Name: NF8076_low_11
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_11 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 21 - 218
Target Start/End: Complemental strand, 52799342 - 52799145
Alignment:
| Q |
21 |
ggtggaatcgaaaaataaaatttgttgggtgaagtgggagcaaacgtgtaagccggaaaaagatggagggctaggtattagagatttggggttcatgaat |
120 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||||||||||| |
|
|
| T |
52799342 |
ggtggaatcgaaaaataaaatttgttgggcgaagtgggagcaaacgtgtaagccggaaaaagatgaagggctaggtattacagatttagggttcatgaat |
52799243 |
T |
|
| Q |
121 |
ctagctctttttgcaaagtggagatgaaagttattagttgagaggggttctttgtggattgctaaacatggcgattgtgtcgtgttggtctagatgta |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52799242 |
ctagctctttttgcaaagtggagatgaaagttattagttgagaggggttctttgtggattgctaaacatggtgattgtgtcgtgttggtctagatgta |
52799145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University