View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_low_14 (Length: 245)
Name: NF8076_low_14
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_14 |
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Alignment Details
Target: chr8 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 17 - 234
Target Start/End: Original strand, 26180240 - 26180457
Alignment:
| Q |
17 |
aagattgtgatacaaatgatccacaatttaaaaccttggttaaaacatttaatgagaattgaattaattgaaaaataaagaaataaacaaaccttgccat |
116 |
Q |
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| T |
26180240 |
aagattgtgatacaaatgatccacaatttaaaaccttggttaaaacatttaatgagaattgaattaattgaaaaataaagaaataaacaaaccttgccat |
26180339 |
T |
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| Q |
117 |
tggcatttgctagtttatgagtaatagctttgattcgaggttcataatccgtaagacgaacatcgatctgaggttcttcagaatcatcgaattgtgtgat |
216 |
Q |
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| T |
26180340 |
tggcatttgctagtttatgagtaatagctttgattcgaggttcataatccgtaagacgaacatcggtctgaggttcttcagaatcatcgaattgtgtgat |
26180439 |
T |
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| Q |
217 |
ttaaatatcaaatctctg |
234 |
Q |
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| T |
26180440 |
ttgaatatcaaatctctg |
26180457 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 17 - 234
Target Start/End: Complemental strand, 26269927 - 26269704
Alignment:
| Q |
17 |
aagattgtgatacaaatgatccac------aatttaaaaccttggttaaaacatttaatgagaattgaattaattgaaaaataaagaaataaacaaacct |
110 |
Q |
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| T |
26269927 |
aagattgtgatacaaatgatccagttccataatttaaaacattggttaaaacatttaatgagaattgaattaattgaaaaataaagaaataaacaaacct |
26269828 |
T |
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| Q |
111 |
tgccattggcatttgctagtttatgagtaatagctttgattcgaggttcataatccgtaagacgaacatcgatctgaggttcttcagaatcatcgaattg |
210 |
Q |
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| T |
26269827 |
tgccattggcatttgctagttaatgagtaaaagctttgattcgaggttcataatccgtaagacgaacatcggtctgaggttcttcagaatcatcaaattg |
26269728 |
T |
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| Q |
211 |
tgtgatttaaatatcaaatctctg |
234 |
Q |
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| T |
26269727 |
tgtgatttgaatatcaaatctctg |
26269704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 37 - 194
Target Start/End: Original strand, 130973 - 131136
Alignment:
| Q |
37 |
ccacaatttaaaaccttggttaaaacatttaatgagaattgaattaattgaa-------aaataaagaaataaacaaaccttgccattggcatttgctag |
129 |
Q |
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||||||||||||||||||||| | |||| ||||||||||||||||| |||| ||||||| |||||||||||||||| |||||||| ||||||| |
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| T |
130973 |
ccacaatttaaaaccttggttgcagcattgaatgagaattgaattaaatgaagaaaaaaaaataaa-aaataaacaaaccttggcattggcagttgctag |
131071 |
T |
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| Q |
130 |
tttatgagtaatagctttgattcgaggttcataatccgtaagacgaacatcgatctgaggttctt |
194 |
Q |
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| T |
131072 |
tttatcagtaatggctttgatttgaggttcataatcagtaagacgaacatctgtctgaagttctt |
131136 |
T |
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