View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_low_16 (Length: 204)
Name: NF8076_low_16
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_16 |
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Alignment Details
Target: chr7 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 12481909 - 12481730
Alignment:
| Q |
11 |
tagcagagacaatcttttggaacctcatttgttcgttttactcaacagttgacagcagttttttcaaatgaaaacgacagccttgccgtattgattgaac |
110 |
Q |
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| T |
12481909 |
tagcagagacaatcttttggaacctcatttgttcgttttactcaacagttgacagcagttttttcaaatgaaaacgacagccttgccgtattgattgaac |
12481810 |
T |
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| Q |
111 |
caaagttatactttatgactccagcatcattatcaactgtattgcttgtggaagggaaggaaaatactactgctggattt |
190 |
Q |
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| T |
12481809 |
caaagttatactttatgactccagcatcattatcaactgtattgcttgtggaagggaaggaaaagactactgctggattt |
12481730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 11 - 190
Target Start/End: Complemental strand, 12503339 - 12503160
Alignment:
| Q |
11 |
tagcagagacaatcttttggaacctcatttgttcgttttactcaacagttgacagcagttttttcaaatgaaaacgacagccttgccgtattgattgaac |
110 |
Q |
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| T |
12503339 |
tagcagagacaatcttttggaacctcatttgttcgttttactcaacagttgacagcagttttttcaaatgaaaacgacagccttgccgtattgattgaac |
12503240 |
T |
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| Q |
111 |
caaagttatactttatgactccagcatcattatcaactgtattgcttgtggaagggaaggaaaatactactgctggattt |
190 |
Q |
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| T |
12503239 |
caaagttatactttatgactccagcatcattatcaactgtattgcttgtggaagggaaggaaaagactactgctggattt |
12503160 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 30608993 - 30608824
Alignment:
| Q |
18 |
gacaatcttttggaacctcatttgttcgttttactcaacagttgacagcagttttttcaaatgaaaacgacagccttgccgtattgattgaaccaaagtt |
117 |
Q |
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|||||| |||||||||||| | |||||||| |||||||||| ||||||||||||||||||||||||||||||||||| ||| | | ||||||||||| |
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| T |
30608993 |
gacaattttttggaacctcgt--gttcgtttgactcaacagtcgacagcagttttttcaaatgaaaacgacagccttgggttatcggtcgaaccaaagtt |
30608896 |
T |
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| Q |
118 |
atactttatgactccagcatcattatcaactgtattgcttgtggaagggaaggaaaatactactgctggatt |
189 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30608895 |
atacttaatgactcctgcatcattatcaactgtattgcttgtggaagggaaggaaaaaactactgctggatt |
30608824 |
T |
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