View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8076_low_2 (Length: 702)
Name: NF8076_low_2
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 616; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 51 - 695
Target Start/End: Original strand, 50804051 - 50804695
Alignment:
| Q |
51 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804051 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
50804150 |
T |
|
| Q |
151 |
gcattttcacatctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatccggcaatag |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804151 |
gcattttcacatctctgaaacactctagcaagtgaagcggctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatccggcaatag |
50804250 |
T |
|
| Q |
251 |
gtggtgccttaacaaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaaatgcattctccttgcccatcggtgttccaca |
350 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804251 |
gtggtgccttaaccaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaaatgcattctccttgcccatcggtgttccaca |
50804350 |
T |
|
| Q |
351 |
acgcatctcctatcaatccaaacaaagcaaacaaaaagatgtagatacaatgatataaaattatgttattcaacccgactcaatagtcctgaacaaagnn |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804351 |
acgcatctcctatcaatccaaacaaagcaaacaaaaagatgtagatacaatgatataaaattatgttattcaacccgactcaatagtcctgaacaaagaa |
50804450 |
T |
|
| Q |
451 |
nnnnnttgatggttctagttaacaacacatttatacgaagcacaaaaagtttatcactgcaaattaggaattgtctcattaagcaataagttagttaagt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50804451 |
aaaaattgatggttctagttaacaacacatttatacgaagcacaaaaagtttatcactgcaaattaggaattgtctcattaagcaataagttagttaagt |
50804550 |
T |
|
| Q |
551 |
cttaatactgcactaatggaacatgttttagttcatatcacctcagaagagtatattgaaaaggtaaagcatgtattgtgaaactcactagaaaacattt |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50804551 |
cttaatactgcactaatggaacatgttttagttcatatcacctcagaagagtatattgaaaaggtaaagcatgtattgtgaaactcactagaaaacattt |
50804650 |
T |
|
| Q |
651 |
gttataacttcataaggatctgatccagccccaataaacaccaaa |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50804651 |
gttataacttcataaggatctgatccagccccaataaacaccaaa |
50804695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 616; E-Value: 0
Query Start/End: Original strand, 51 - 695
Target Start/End: Complemental strand, 50871826 - 50871182
Alignment:
| Q |
51 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871826 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
50871727 |
T |
|
| Q |
151 |
gcattttcacatctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatccggcaatag |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871726 |
gcattttcacatctctgaaacactctagcaagtgaagcggctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatccggcaatag |
50871627 |
T |
|
| Q |
251 |
gtggtgccttaacaaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaaatgcattctccttgcccatcggtgttccaca |
350 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
50871626 |
gtggtgccttaaccaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaaatgcattctccttgcccatcggtgttccaca |
50871527 |
T |
|
| Q |
351 |
acgcatctcctatcaatccaaacaaagcaaacaaaaagatgtagatacaatgatataaaattatgttattcaacccgactcaatagtcctgaacaaagnn |
450 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871526 |
acgcatctcctatcaatccaaacaaagcaaacaaaaagatgtagatacaatgatataaaattatgttattcaacccgactcaatagtcctgaacaaagaa |
50871427 |
T |
|
| Q |
451 |
nnnnnttgatggttctagttaacaacacatttatacgaagcacaaaaagtttatcactgcaaattaggaattgtctcattaagcaataagttagttaagt |
550 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871426 |
aaaaattgatggttctagttaacaacacatttatacgaagcacaaaaagtttatcactgcaaattaggaattgtctcattaagcaataagttagttaagt |
50871327 |
T |
|
| Q |
551 |
cttaatactgcactaatggaacatgttttagttcatatcacctcagaagagtatattgaaaaggtaaagcatgtattgtgaaactcactagaaaacattt |
650 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871326 |
cttaatactgcactaatggaacatgttttagttcatatcacctcagaagagtatattgaaaaggtaaagcatgtattgtgaaactcactagaaaacattt |
50871227 |
T |
|
| Q |
651 |
gttataacttcataaggatctgatccagccccaataaacaccaaa |
695 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
50871226 |
gttataacttcataaggatctgatccagccccaataaacaccaaa |
50871182 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 440; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 162 - 695
Target Start/End: Complemental strand, 19058025 - 19057490
Alignment:
| Q |
162 |
tctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatccggcaataggtggtgcctta |
261 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
|
|
| T |
19058025 |
tctctgaaacactctagcaagtgaagcggctttacgtctagctcactttgtcccggtaaatagtagggtttgaagtaatccggcaatagctggtgcctta |
19057926 |
T |
|
| Q |
262 |
acaaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaaatgcattctccttgcccatcggtgttccacaacgcatc--tc |
359 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| || |
|
|
| T |
19057925 |
accaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaactgcattctccttacccatcggtgttccacaacgcatcattc |
19057826 |
T |
|
| Q |
360 |
ctatcaatccaaacaaagcaaacaaaaagatgtagatacaatgatataaaattatgttattcaacccgactcaatagtcctgaacaaagnnnnnnnttga |
459 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||| |
|
|
| T |
19057825 |
ctatcaatccaaacaaagcaaacaaaaagatgtaaatacaatgatataaaagtatgttattcaacccgactcaacagtcctgaacaaagaaaaaaattga |
19057726 |
T |
|
| Q |
460 |
tggttctagttaacaacacatttatacgaagcacaaaaagtttatcactgcaaattaggaattgtctcattaagcaataagttagttaagtcttaatact |
559 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
19057725 |
tggttctagttaacaacacatttataagaagcacaaaaagtttatcactgcaaattaggaattgtctaattaagcaataagttagttaagtcttaatact |
19057626 |
T |
|
| Q |
560 |
gcactaatggaacatgttttagttcatatcacctcagaagagtatattgaaaaggtaaagcatgtattgtgaaactcactagaaaacatttgttataact |
659 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||||||| |
|
|
| T |
19057625 |
gcactaatggaacatgttttagttcatatcacttcagaagagtatattgaaaaggtaaagcatgtattgtgaaactcacttgacagcatttgttataact |
19057526 |
T |
|
| Q |
660 |
tcataaggatctgatccagccccaataaacaccaaa |
695 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
19057525 |
tcataaggatctgatccagccccaataaacaccaaa |
19057490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 51 - 370
Target Start/End: Complemental strand, 5286350 - 5286030
Alignment:
| Q |
51 |
ggtactgaaacatccctctgcagcaaagcttgaatccctagtttgagctgaattgctagccaatgcatagcctacacctaatccaccataatgtagagat |
150 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
5286350 |
ggtactgaaacatccc-ctgcagcaaagcttgaatctctagtttgagctgaattgctagcaaatgcatagcctacacctaatccaccgtaatgcagagat |
5286252 |
T |
|
| Q |
151 |
gcattttcacatctctgaaacactctagcaagtgaagcagctttacgtctagctcgctttgtcccggtaaatagttgggtttgaagtaatccggcaatag |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
5286251 |
gcattttcacatctctgaaacactctagcaagtgaagcggctttacgtctagctcgctttgtcccggtaaataatagggtttgaagtaatccggcaatag |
5286152 |
T |
|
| Q |
251 |
gtggtgccttaacaaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcaaatgcattctccttgcccatcggtgttccaca |
350 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||| ||||||||||||| |
|
|
| T |
5286151 |
ctggtgccttaactaccctttcagttgcagctgaacctccactccggcataactcgagcaatgctgcgactgcattctccttacccctcggtgttccaca |
5286052 |
T |
|
| Q |
351 |
acgcatc--tcctatcaatcca |
370 |
Q |
| |
|
||||||| ||||||||||||| |
|
|
| T |
5286051 |
acgcatcattcctatcaatcca |
5286030 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 605 - 695
Target Start/End: Complemental strand, 42349325 - 42349235
Alignment:
| Q |
605 |
attgaaaaggtaaagcatgtattgtgaaactcactagaaaacatttgttataacttcataaggatctgatccagccccaataaacaccaaa |
695 |
Q |
| |
|
|||||||||||||| || ||| ||||||||||||| || | |||||||||| || | |||||||||||||||||||||||||||||||||| |
|
|
| T |
42349325 |
attgaaaaggtaaaacaagtaatgtgaaactcacttgacagcatttgttatgaccttataaggatctgatccagccccaataaacaccaaa |
42349235 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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