View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_low_3 (Length: 479)
Name: NF8076_low_3
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 144; Significance: 2e-75; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 144; E-Value: 2e-75
Query Start/End: Original strand, 242 - 396
Target Start/End: Complemental strand, 31755126 - 31754971
Alignment:
| Q |
242 |
gtgattattgtactgtatatcgacgtggctacctgatgttgtatggtcgtggcattggaaaaagtaagatagatgatgaaatgagagtgagacacaatat |
341 |
Q |
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| T |
31755126 |
gtgattattgtactgtatatcgacgtggctacctgatgtcgtatggtcgtggcattggaaaaagtaagatagatgatgaaatgagagtgagacacaatat |
31755027 |
T |
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| Q |
342 |
tgatctttactgatat-cccctaacccatcacattcacataaccccccatttgcag |
396 |
Q |
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| T |
31755026 |
tgatctttactgatatccccctaacccatcacattcacataaccccccatttgcag |
31754971 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 106 - 226
Target Start/End: Complemental strand, 31755239 - 31755113
Alignment:
| Q |
106 |
tcagtacgccttgtacgagttgagccatcaaaggtttctaatatattatattttggcttgttaaaaaattaatataaaattgtgaaa------ataacat |
199 |
Q |
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| T |
31755239 |
tcagtacgtcttgtacgagttgagccatcaaagatttttaatatattatatttgggcttgttaaaaaatcaatataaaattgtgaaagactatataacat |
31755140 |
T |
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| Q |
200 |
tataaagaataaagtgattattgtact |
226 |
Q |
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| T |
31755139 |
tataaagaataaagtgattattgtact |
31755113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 45 - 100
Target Start/End: Complemental strand, 31755797 - 31755742
Alignment:
| Q |
45 |
catttgaagtgcgttgtttatgcacatgtaacttgatattgcatctttgttggtgg |
100 |
Q |
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| T |
31755797 |
catttgaagtgcgttgtttatgcacctgtaacttgatattgcatctttgttggtgg |
31755742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 69; Significance: 9e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 45 - 169
Target Start/End: Complemental strand, 40738804 - 40738681
Alignment:
| Q |
45 |
catttgaagtgcgttgtttatgcacatgtaacttgatattgcatctttgttggtggctcactcagtacgccttgtacgagttgagccatcaaaggtttct |
144 |
Q |
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| T |
40738804 |
catttggagtgcgttgtt-atgcacatgtaacttgacattgtatctttgttggtggctcgctttgcacgccttatgcgagttgagccactaaaggtttct |
40738706 |
T |
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| Q |
145 |
aatatattatattttggcttgttaa |
169 |
Q |
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| T |
40738705 |
aatatattttattttggcttgttaa |
40738681 |
T |
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