View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_low_8 (Length: 296)
Name: NF8076_low_8
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 270
Target Start/End: Original strand, 52798864 - 52799122
Alignment:
| Q |
14 |
attattctatgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaaggaatcaggtccaagtccaccaagacgaccacctcgtc |
113 |
Q |
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| T |
52798864 |
attattctatgtgttgtccaataacaaagctcattaaaaatatggcatgaatgtacaataaaggaatcaggtccaagtccaccaaggcgaccacctcgtc |
52798963 |
T |
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| Q |
114 |
tcttagcatgatgcaacacaaaatcttcctaaaattggatagccatcttattcccaagcttcctaaaaatcgaaatttggagtgaaccgccttcacaatc |
213 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
52798964 |
tcttagcatgatgcaacacaaaatcttcctaaaattggatagtcatcttattcccaagcttcctaaaaattaaaatttggagtgaaccgccttcacaatc |
52799063 |
T |
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| Q |
214 |
cttcatcaca--cacaacttaagtccttccaccaacgcgatacaattcattttacaaaa |
270 |
Q |
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||||| |||| |||||||||||||||||||||||| || |||||||||||||||||| |
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| T |
52799064 |
cttcaccacacccacaacttaagtccttccaccaacacggcacaattcattttacaaaa |
52799122 |
T |
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