View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8076_low_9 (Length: 294)
Name: NF8076_low_9
Description: NF8076
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8076_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 204; Significance: 1e-111; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 13 - 275
Target Start/End: Original strand, 15591315 - 15591578
Alignment:
| Q |
13 |
aatatgattcctaatgccgagaaattcatcagagag-ccagttgtatagaagagggcgttgatctctcaaactaaatgatacatcagtttctacaaggag |
111 |
Q |
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| T |
15591315 |
aatatgattcctaatgtcgagaaattcatcagagagtccagttgtagagaagagggcgttgatctctcaaactaaatgatacatcagtttctacaaggag |
15591414 |
T |
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| Q |
112 |
agctgatgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagctttaccaccttaccgtctccact |
211 |
Q |
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| T |
15591415 |
--ctgatgatgattctacgcaaaatctgagccagatcagcaactcctttgagaaaacgttcggccttatccatcagctttaccaccttaccgtctccacc |
15591512 |
T |
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| Q |
212 |
ttgaacgttgtcttttaaatgtcactgca--ttttttataggtctttgtcttaacggtgatgatca |
275 |
Q |
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| T |
15591513 |
ttgaacgttgtctttcaaatgtcactgcattttttttataggtctttgtcttaacggtgatgatca |
15591578 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 118 - 189
Target Start/End: Complemental strand, 35445739 - 35445668
Alignment:
| Q |
118 |
tgatgattctatgcaaaatcttagccagatcagcaactcctttgagaaaactttgggccttatccatcagct |
189 |
Q |
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|||||||||||||||||| ||||||||||||||||||||| |||||||||| ||||||| ||||||||||| |
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| T |
35445739 |
tgatgattctatgcaaaaccttagccagatcagcaactccattgagaaaaccctgggcctcatccatcagct |
35445668 |
T |
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