View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8077_high_1 (Length: 464)
Name: NF8077_high_1
Description: NF8077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8077_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 1 - 448
Target Start/End: Original strand, 4606357 - 4606804
Alignment:
| Q |
1 |
gaacaacgtactacgcagttgacttctctacttgaacttaattgtcattcagttcaagactcatatgtttgaaataataatgagaaattaaaattttagc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||| ||||| |
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| T |
4606357 |
gaacaacgtactacgcagttgacttctctacttgaacttaattgtcattcagttcaaggctcatatgtttgaaatgataatgagaaattaaaatcttagc |
4606456 |
T |
|
| Q |
101 |
tcctttgtgttgtagtgtgagttcnnnnnnnactcagcgtctgctttttatttgggttccctagttcccaaggattcacttgagtgttgagaactttacg |
200 |
Q |
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||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
4606457 |
tcctt-gtgttgtagtgtgagttctttttttactcagcgtctgctttttatttgggttccctagttcccaaggattcacttgagagttgagaactttacg |
4606555 |
T |
|
| Q |
201 |
acttgtttggacttggaaaaaagtaagttcatttttcaagttactatgtttcaactcc-nnnnnnnaaaataaaattctttctacaaataaatcaaagac |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4606556 |
acttgtttggacttggaaaaaagtaagttcatttttcaagttactatgtttcaactccttttttttaaaataaaattctttctacaaataaatcaaagac |
4606655 |
T |
|
| Q |
300 |
acaatagtaagagcttcaagttaattgacgttaacctaacactttttggaaggcatctcatacagaggactgcctgcctactgtagttgaggaggaagtc |
399 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4606656 |
acaatagtacgagcttcaagttaattgacgttaacctaacactttttggaagggatctcatacagaggactgcctgcctactgtagttgaggaggaagtc |
4606755 |
T |
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| Q |
400 |
aggtgatatcctttaaatatatgttttatttatgtgtatatcaatttat |
448 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4606756 |
aggtgatatcctttaaatatatgttttatttatgtgtatatcaatttat |
4606804 |
T |
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