View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8077_high_3 (Length: 356)

Name: NF8077_high_3
Description: NF8077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8077_high_3
NF8077_high_3
[»] chr4 (2 HSPs)
chr4 (1-206)||(4606103-4606308)
chr4 (245-290)||(23084107-23084152)
[»] chr7 (7 HSPs)
chr7 (245-291)||(32457185-32457231)
chr7 (232-291)||(41014000-41014059)
chr7 (245-291)||(584861-584907)
chr7 (245-291)||(1694395-1694441)
chr7 (245-291)||(15076155-15076201)
chr7 (230-291)||(27262576-27262637)
chr7 (231-291)||(41648642-41648702)
[»] chr8 (3 HSPs)
chr8 (243-291)||(45509629-45509677)
chr8 (245-291)||(1030771-1030817)
chr8 (245-291)||(38389881-38389927)
[»] chr1 (7 HSPs)
chr1 (235-291)||(4051445-4051500)
chr1 (245-291)||(1053297-1053343)
chr1 (245-291)||(31880247-31880293)
chr1 (245-291)||(50846456-50846502)
chr1 (245-291)||(51680857-51680903)
chr1 (246-291)||(33417941-33417986)
chr1 (243-291)||(35864763-35864811)
[»] chr3 (7 HSPs)
chr3 (232-291)||(31311343-31311402)
chr3 (243-290)||(43974007-43974054)
chr3 (245-291)||(43140527-43140573)
chr3 (245-291)||(43862531-43862577)
chr3 (245-291)||(45300874-45300920)
chr3 (245-290)||(34330772-34330817)
chr3 (235-291)||(8398893-8398949)
[»] scaffold2128 (1 HSPs)
scaffold2128 (245-291)||(612-658)
[»] chr5 (3 HSPs)
chr5 (245-291)||(24363046-24363092)
chr5 (238-290)||(6670814-6670866)
chr5 (243-291)||(27581877-27581925)
[»] chr2 (2 HSPs)
chr2 (245-283)||(43568935-43568973)
chr2 (246-290)||(32144589-32144633)


Alignment Details
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 4606308 - 4606103
Alignment:
Q  1 tgttaaaattataatttaaattgaaattggaattaaaactataactttaatgcggaaatcgaactcttgtttgagtgatagcttgctgagacatgggtat 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4606308 tgttaaaattataatttaaattgaaattggaattaaaactataactttaatgcggaaatcgaactcttgtttgagtgatagcttgctgagacatgggtat 4606209  T
Q  101 tcactatgctagtgcattatcagttctctaaaattgttcatgatagaccaacgatggaaggagtcgagatagaggcggtggttaagggcccaaatggtaa 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||     
T  4606208 tcactatgctagtgcattatcagttctctaaaattgttcatgatagaccaacgatggatggagtcgagatagaggcggtggttaagggcccaaatggtac 4606109  T
Q  201 taaaag 206  Q
    ||||||    
T  4606108 taaaag 4606103  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Complemental strand, 23084152 - 23084107
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcatttta 290  Q
    ||||||||||||||| ||||||| ||||||| ||||||| ||||||    
T  23084152 ttaaatatgtttttggtccttataaatattccaactttttatttta 23084107  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 32457231 - 32457185
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| |||||||||||||||||    
T  32457231 ttaaatatgtttttggtccttataaatatactaacttttcattttag 32457185  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 41014059 - 41014000
Alignment:
Q  232 atatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    |||||||||| | ||||||||||||||| ||||||| |||||  ||||||||| ||||||    
T  41014059 atatattttagggttaaatatgtttttggtccttataaatatattaacttttcgttttag 41014000  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 584861 - 584907
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| |||||  ||||||||||||||||    
T  584861 ttaaatatgtttttggtccttataaatatattaacttttcattttag 584907  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 1694395 - 1694441
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| |||| ||||||||||||    
T  1694395 ttaaatatgtttttggtccttataaatatactaatttttcattttag 1694441  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 15076155 - 15076201
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||||||| ||| |||||  ||||||||||||||||    
T  15076155 ttaaatatgtttttgttccctataaatatgttaacttttcattttag 15076201  T

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Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 230 - 291
Target Start/End: Complemental strand, 27262637 - 27262576
Alignment:
Q  230 gtatatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    |||||||||||||| ||||||||| |||||||| |||| |||||   |||||||| ||||||    
T  27262637 gtatatattttaaggttaaatatgattttgttctttataaatataacaacttttcgttttag 27262576  T

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Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 231 - 291
Target Start/End: Complemental strand, 41648702 - 41648642
Alignment:
Q  231 tatatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||  | ||||||||||||||||||| ||| |||||   |||||||||||||||    
T  41648702 tatatatttttgggttaaatatgtttttgttccatataaatatgtcaacttttcattttag 41648642  T

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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 291
Target Start/End: Original strand, 45509629 - 45509677
Alignment:
Q  243 gattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  45509629 gattaaatatgtttttggtccctataaatatactaacttttcattttag 45509677  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 1030771 - 1030817
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  1030771 ttaaatatgtttttgatccttataaatataccaacttttcattttag 1030817  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 38389927 - 38389881
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  38389927 ttaaatatgtttttgatccttataaatatactaacttttcgttttag 38389881  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 235 - 291
Target Start/End: Complemental strand, 4051500 - 4051445
Alignment:
Q  235 tattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||| ||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  4051500 tattttaag-ttaaatatgtttttggtccttataaatatactaacttttcgttttag 4051445  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 1053297 - 1053343
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  1053297 ttaaatatgtttttggtccttataaatatactaacttttcgttttag 1053343  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 31880247 - 31880293
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  31880247 ttaaatatgtttttggtccttataaatataccaacttttcattttag 31880293  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 50846456 - 50846502
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| |||||||  |||| |||||||||||||||||    
T  50846456 ttaaatatgtttttggtccttatagatatactaacttttcattttag 50846502  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 51680857 - 51680903
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  51680857 ttaaatatgtttttgatccttataaatataccaacttttcattttag 51680903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 33417986 - 33417941
Alignment:
Q  246 taaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    |||||||||||||| ||||||| ||||| |||||||||| ||||||    
T  33417986 taaatatgtttttgatccttataaatatgctaacttttcgttttag 33417941  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 35864811 - 35864763
Alignment:
Q  243 gattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||||| ||||||| ||||| | |||||||| ||||||    
T  35864811 gattaaatatgtttttggtccttataaatataccaacttttcgttttag 35864763  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 232 - 291
Target Start/End: Complemental strand, 31311402 - 31311343
Alignment:
Q  232 atatattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    |||||||||| | ||||||||||||||| ||| ||| ||||| | |||||||||||||||    
T  31311402 atatattttagggttaaatatgtttttggtccctataaatatacaaacttttcattttag 31311343  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 43974007 - 43974054
Alignment:
Q  243 gattaaatatgtttttgttccttatcaatattctaacttttcatttta 290  Q
    ||||||||||||||||| ||||||| ||||| | ||||||||||||||    
T  43974007 gattaaatatgtttttggtccttataaatataccaacttttcatttta 43974054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 43140527 - 43140573
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  43140527 ttaaatatgtttttggtccctataaatatactaacttttcattttag 43140573  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 43862531 - 43862577
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  43862531 ttaaatatgtttttggtccttataaatataccaacttttcattttag 43862577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 45300874 - 45300920
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||| ||| |||||||||||||||| ||||||    
T  45300874 ttaaatatgtttttgatccctataaatattctaacttttcgttttag 45300920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 290
Target Start/End: Original strand, 34330772 - 34330817
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcatttta 290  Q
    ||||||||||||||||||||||| ||||| | |||||||| |||||    
T  34330772 ttaaatatgtttttgttccttataaatatacaaacttttcgtttta 34330817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 291
Target Start/End: Original strand, 8398893 - 8398949
Alignment:
Q  235 tattttaagattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||| | ||||||||||||||| ||||||| ||||| | |||||||| ||||||    
T  8398893 tattttagggttaaatatgtttttggtccttataaatatgccaacttttcgttttag 8398949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2128 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold2128
Description:

Target: scaffold2128; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Original strand, 612 - 658
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||||||| ||||| | |||||||||||||||    
T  612 ttaaatatgtttttggtccttataaatataccaacttttcattttag 658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 291
Target Start/End: Complemental strand, 24363092 - 24363046
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||| ||| ||| ||||| |||||||||||||||||    
T  24363092 ttaaatatgtttttggtccatataaatatactaacttttcattttag 24363046  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 238 - 290
Target Start/End: Complemental strand, 6670866 - 6670814
Alignment:
Q  238 tttaagattaaatatgtttttgttccttatcaatattctaacttttcatttta 290  Q
    |||||||||||||||||||||  ||||||| ||||| | || |||||||||||    
T  6670866 tttaagattaaatatgttttttatccttataaatatacaaagttttcatttta 6670814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 243 - 291
Target Start/End: Complemental strand, 27581925 - 27581877
Alignment:
Q  243 gattaaatatgtttttgttccttatcaatattctaacttttcattttag 291  Q
    ||||||||||||||||||||| ||| ||||| | |||||||| ||||||    
T  27581925 gattaaatatgtttttgttccctataaatatacaaacttttcgttttag 27581877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 245 - 283
Target Start/End: Complemental strand, 43568973 - 43568935
Alignment:
Q  245 ttaaatatgtttttgttccttatcaatattctaactttt 283  Q
    ||||||||||||||||||||||| ||||||| |||||||    
T  43568973 ttaaatatgtttttgttccttataaatattcaaactttt 43568935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 290
Target Start/End: Complemental strand, 32144633 - 32144589
Alignment:
Q  246 taaatatgtttttgttccttatcaatattctaacttttcatttta 290  Q
    |||||||||||||| | ||||| |||||| |||||||||||||||    
T  32144633 taaatatgtttttgatgcttataaatattttaacttttcatttta 32144589  T

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