View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8077_high_4 (Length: 356)
Name: NF8077_high_4
Description: NF8077
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8077_high_4 |
 | |
|
| [»] chr1 (1 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 356
Target Start/End: Original strand, 48254507 - 48254854
Alignment:
| Q |
15 |
aaaaaatacaacccttacttttatttaaagatgataccagtagcagttttatatttcaactagatttgatttaatttattcagatttttgaaatgaaaat |
114 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254507 |
aaaaaattcaacccttacttttatttaaagatgataccggtagcagttttatatttcaactagatttgatttaatttattcagatttttgaaatgaaaat |
48254606 |
T |
|
| Q |
115 |
taggtgctcgagcatcctcaagtggtcagtagtttggattgtaagaccgaatcagtta-------taggtaagaggttttcagtgttttctgttctgttc |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
48254607 |
taggtgctcgagcatcctcaagtggtcagtagtttggattgtaagaccgaatcagttataggtattaggtaagaggttttcagtgttttctgttctgttc |
48254706 |
T |
|
| Q |
208 |
ttcaactcacatttttctcctaaaaacaccattcacacgtactatttatttatgtgcaaaaaatataacaggaagaatct-aaacttagttttgttcaag |
306 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
48254707 |
atcaactcacatttttctcctaaaaaaaccattcacacgtatta-ttatttatgtgcaaaaaatataacaggaagaatctaaaacttagttttgttcaag |
48254805 |
T |
|
| Q |
307 |
gtttgtctaattttgnnnnnnnagttaagtagcaaagtgactagacattc |
356 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
48254806 |
gtttgtctaattttg-ttttttagttaagtagcaaagtgactagacattc |
48254854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University