View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8078_high_4 (Length: 243)
Name: NF8078_high_4
Description: NF8078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8078_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 106; Significance: 4e-53; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 30 - 208
Target Start/End: Complemental strand, 46101628 - 46101463
Alignment:
| Q |
30 |
acaaaagaaagatgtatattcatgaaatttatagttagtaatttaaatacaagtacaagctactagtactatcctactacaccactatgttgaatactaa |
129 |
Q |
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| T |
46101628 |
acaaaagaaagatttatattcatgaaatgtatagttagtaatttaaatacaag------ctactagtattatcctactacaccactatgttgactactaa |
46101535 |
T |
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| Q |
130 |
aatttttagaaagttaaaacatggtggtaagggcaatattatctttttcattaaaatgatttgctccctccactttctc |
208 |
Q |
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| T |
46101534 |
aaattttagaaa-------catggtggtaagggcaatattgtctttttcattaaaatgatttgctccctccactttctc |
46101463 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 46101691 - 46101650
Alignment:
| Q |
1 |
ttataatacaccactatgttagtaatttaacaaaagaaagat |
42 |
Q |
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| T |
46101691 |
ttataatacaccactatgttagtaatttaacaaaagaaagat |
46101650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Original strand, 45774851 - 45774944
Alignment:
| Q |
1 |
ttataatacaccactatgttagtaatttaacaaaagaaagatgtatattcatgaaatttatagttagtaatttaaatacaagtacaagctacta |
94 |
Q |
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| T |
45774851 |
ttataatacaccactatgttagtaatttaactaaagaaagatatatattcataaaatttatagttagtaatttaaatacaagtacaagctacta |
45774944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 131 - 208
Target Start/End: Original strand, 45775008 - 45775088
Alignment:
| Q |
131 |
atttttagaaagttaaaaca---tggtggtaagggcaatattatctttttcattaaaatgatttgctccctccactttctc |
208 |
Q |
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| T |
45775008 |
atttttagaaagttaaaacaatatggtagtaagggctatattgtctttttaattaaaaaagtttgctccctccactttctc |
45775088 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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