View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8078_high_5 (Length: 233)
Name: NF8078_high_5
Description: NF8078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8078_high_5 |
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Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 16 - 219
Target Start/End: Original strand, 34763772 - 34763975
Alignment:
| Q |
16 |
tcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatg |
115 |
Q |
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| T |
34763772 |
tcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatg |
34763871 |
T |
|
| Q |
116 |
caacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgaggtgaagaagtgggttatccaaaag |
215 |
Q |
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| T |
34763872 |
caacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaaag |
34763971 |
T |
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| Q |
216 |
atga |
219 |
Q |
| |
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|||| |
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| T |
34763972 |
atga |
34763975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 215
Target Start/End: Complemental strand, 34780342 - 34780141
Alignment:
| Q |
14 |
tatcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtgga |
113 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34780342 |
tatcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtgga |
34780243 |
T |
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| Q |
114 |
tgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgaggtgaagaagtgggttatccaaa |
213 |
Q |
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| T |
34780242 |
tgcaacaacggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgctttcctaacttgataagagtgtggtgaagaagtgggttatccaaa |
34780143 |
T |
|
| Q |
214 |
ag |
215 |
Q |
| |
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|| |
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| T |
34780142 |
ag |
34780141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 16 - 215
Target Start/End: Original strand, 34755796 - 34755995
Alignment:
| Q |
16 |
tcataggtaagacgactaatagcagaggtttggaatcttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggagtggatg |
115 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || | |
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| T |
34755796 |
tcataggtaagacgactaatagcagaggtttggaaccttgtgttaaaggaagtagcttcatgggtttgaaggaaaagtttaaacaagtcaggggttgagg |
34755895 |
T |
|
| Q |
116 |
caacaacggtaggcatggaaccaaagtaaagagtgtacaaaggtccataacgctttcctaacttgataagagtgaggtgaagaagtgggttatccaaaag |
215 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||| |||||||| | ||||||||||||||||||| |||||||||| |||||||||||||| |
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| T |
34755896 |
caacaatggtaggcatggaaccaaagtaaagagtgtacaaagggccataacgttctcctaacttgataagagtgtggtgaagaagagggttatccaaaag |
34755995 |
T |
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