View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8078_low_1 (Length: 645)
Name: NF8078_low_1
Description: NF8078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8078_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 320; Significance: 1e-180; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 292 - 627
Target Start/End: Complemental strand, 7550231 - 7549896
Alignment:
| Q |
292 |
taacttctttctcaattttaccagtttcatttctcaaaagattgtggtacttaattagtaagaacttaagtatggacttggggttaggaattgggattgg |
391 |
Q |
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| T |
7550231 |
taacttctttctcaattttaccagtttcatttctcaaaagattgtggtacttaattagtaagaacttaagtatggacttggggttaggaattgggattgg |
7550132 |
T |
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| Q |
392 |
gcatcggaaagtcaagagcattagtcatgttttggttatgggtttgatggggaatagttaggttctgattatgggtttgaaggcattagtcagactttag |
491 |
Q |
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| T |
7550131 |
gcatcggaaagtcaagagcattagtcatgttttggttatgggtttgatggggaatagttaggttctgattatgggtttgaaggcattagtcagactttag |
7550032 |
T |
|
| Q |
492 |
gcatgagtctcaggaagactttgaatctgattgagtaaattatcatagactttagtttgtgattgccatgtataatgtattcatctgaccacgattttgc |
591 |
Q |
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| T |
7550031 |
gcatgagtctcaggaagattttgaatctgattgagtaaattatcatagactttagtttgtgattgccatttataatgtattcatcggaccacgattttgc |
7549932 |
T |
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| Q |
592 |
atttgctgctacaaaggtatgttggaaatacttcct |
627 |
Q |
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| T |
7549931 |
atttgctgctacaaaggtatgtaggaaatacttcct |
7549896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 13 - 238
Target Start/End: Complemental strand, 7550507 - 7550287
Alignment:
| Q |
13 |
aatatggttagttgattgtgacatttacatacacagatcaatttttcttttctttggtgccctgagccttttcatgcattaatttatcattttgtcaagc |
112 |
Q |
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| T |
7550507 |
aatatggttagttgattgtgacatttacatacaccgatcaatttttcttt-----ggtgccctaagccttttcatgcattaatttatcattttggcaagc |
7550413 |
T |
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| Q |
113 |
cgttttgaaactagatacttttcgttgggtgaaatagtcactgaaattaggtagaaattttaatatcctaattataacaaatgcttaagtttggggtgga |
212 |
Q |
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| T |
7550412 |
cgttttgaaacaagatacttttcgttgggtgaaatagtcactgaaattaggtagaaattttaatatcctaattataacaaatgcttaagtttggggtgga |
7550313 |
T |
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| Q |
213 |
gtattagaaaacttaattatctattt |
238 |
Q |
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| T |
7550312 |
gtattagaaaacttaattatctattt |
7550287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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