View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8078_low_2 (Length: 396)

Name: NF8078_low_2
Description: NF8078
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8078_low_2
NF8078_low_2
[»] chr1 (8 HSPs)
chr1 (1-388)||(46101671-46102080)
chr1 (192-318)||(46599040-46599166)
chr1 (192-318)||(1048978-1049104)
chr1 (216-318)||(14592085-14592187)
chr1 (241-318)||(29675360-29675437)
chr1 (241-321)||(8248953-8249033)
chr1 (241-319)||(1047835-1047913)
chr1 (237-315)||(25018225-25018303)
[»] chr3 (9 HSPs)
chr3 (1-319)||(45774545-45774871)
chr3 (115-320)||(7269497-7269701)
chr3 (188-318)||(7330882-7331012)
chr3 (216-315)||(31543492-31543591)
chr3 (192-313)||(28850029-28850150)
chr3 (252-302)||(30675644-30675694)
chr3 (216-318)||(34721015-34721117)
chr3 (192-313)||(10723678-10723799)
chr3 (209-301)||(12406068-12406159)
[»] chr2 (6 HSPs)
chr2 (131-320)||(925643-925832)
chr2 (192-318)||(6191788-6191914)
chr2 (170-313)||(31642467-31642610)
chr2 (192-318)||(3601770-3601896)
chr2 (192-314)||(13481424-13481546)
chr2 (192-316)||(29078370-29078494)
[»] chr6 (5 HSPs)
chr6 (119-320)||(33858791-33858996)
chr6 (9-61)||(33858178-33858230)
chr6 (216-316)||(34516340-34516440)
chr6 (193-318)||(24167233-24167358)
chr6 (249-316)||(13201484-13201551)
[»] chr8 (8 HSPs)
chr8 (115-320)||(8051470-8051675)
chr8 (192-318)||(16220742-16220869)
chr8 (192-318)||(26724685-26724811)
chr8 (192-318)||(30203239-30203365)
chr8 (182-315)||(41313019-41313152)
chr8 (192-288)||(37810161-37810257)
chr8 (183-315)||(3460728-3460860)
chr8 (252-302)||(39566096-39566146)
[»] chr5 (7 HSPs)
chr5 (115-320)||(26108546-26108751)
chr5 (192-313)||(19555205-19555326)
chr5 (172-317)||(4921442-4921587)
chr5 (172-317)||(41697303-41697448)
chr5 (190-297)||(43229190-43229297)
chr5 (247-318)||(20654662-20654733)
chr5 (216-315)||(39144425-39144524)
[»] chr4 (11 HSPs)
chr4 (192-316)||(36119526-36119650)
chr4 (182-315)||(31518358-31518491)
chr4 (216-320)||(48706872-48706976)
chr4 (211-318)||(5385728-5385834)
chr4 (192-318)||(7138740-7138866)
chr4 (238-320)||(54801658-54801740)
chr4 (192-320)||(53849377-53849505)
chr4 (192-316)||(10310386-10310510)
chr4 (168-264)||(23544143-23544239)
chr4 (241-314)||(48035403-48035476)
chr4 (216-264)||(51333027-51333074)
[»] chr7 (10 HSPs)
chr7 (192-316)||(39878602-39878726)
chr7 (170-318)||(22491686-22491834)
chr7 (195-318)||(33055485-33055608)
chr7 (209-315)||(25750192-25750298)
chr7 (193-318)||(29272737-29272862)
chr7 (216-313)||(41084981-41085078)
chr7 (192-320)||(45225694-45225822)
chr7 (170-316)||(3765668-3765814)
chr7 (241-318)||(45223612-45223689)
chr7 (253-321)||(45024740-45024808)
[»] scaffold0294 (1 HSPs)
scaffold0294 (192-312)||(2106-2226)


Alignment Details
Target: chr1 (Bit Score: 225; Significance: 1e-124; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 1 - 388
Target Start/End: Original strand, 46101671 - 46102080
Alignment:
Q  1 taacatagtggtgtattataaattttatgaatgtacagcttgtactagtagttaaatttta---------aatcacagcagttaacttactaactatatt 91  Q
    |||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||         ||||||||||||||||||||||||||||||    
T  46101671 taacatagtggtgtattataaattttatgaatatacagcttgtattagtagttaaattttataaattttaaatcacagcagttaacttactaactatatt 46101770  T
Q  92 taaaatttatnnnnnnnnn--tacttagaaataaataactaaatataattatgaatatacatcttccttttaacctatcaattatttttattcagggtta 189  Q
    ||||||||||           ||| ||||| |||||||||||||||||||||||||||| || || ||||||||||||||||||||||||||||||||||    
T  46101771 taaaatttataaaaaaaaaaatacgtagaagtaaataactaaatataattatgaatatatatatttcttttaacctatcaattatttttattcagggtta 46101870  T
Q  190 tatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactca 289  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||| ||||||| ||||||||||||||||    
T  46101871 tatatgtcaattactaaaaatatatgtttctttcctttcattttcttctctactttctcttataccaaacaaccaaatcaatcatcttactttccactca 46101970  T
Q  290 ttttctttccttatataatctttcctttcac----------caaccaaacata-cctaaatgtttgtgggtaagtgtgcgcgcgcgtgtgccactgttcg 378  Q
    ||||||||||||  |  |||||||||  |||          |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  46101971 ttttctttcctttcactatctttcctcacactttctttttgcaaccaaacaaaccctaaatgtttgtgggtaagtgtgcgcgcgcgtgtgccactgttcg 46102070  T
Q  379 tatctctgct 388  Q
    ||||||||||    
T  46102071 tatctctgct 46102080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 46599166 - 46599040
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| | || ||| ||  ||||||||| | |||||||  |||||||| |||| |||||||||| || | |||||||||||||||| ||||  |    
T  46599166 tatgtcaattattgaacatagatcattctttcctcttactttctattctactttctcttgtaccaaacaatcataacaatcctcttactttctactctct 46599067  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||||||  | |||||||| ||||||||    
T  46599066 ttcttttttgatataatcattcctttc 46599040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 1048978 - 1049104
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| |||| ||| || | |||||||| | |||||||  |||||||| |||| ||||||||||||| | ||||| | | |||||| ||||  |    
T  1048978 tatgtcaattaataaacatagatctatctttcctcttactttctattctactttctcttctaccaaacaaccataacaatcatttcactttctactctct 1049077  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||| || |||| | |||||||||||||    
T  1049078 ttcatttcttacacaatctttcctttc 1049104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 14592085 - 14592187
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    ||||||||||   |||||||  || ||||| |||| ||||||||||||| | |||||| ||||||||| ||||  |||||||||||| | |||||||| |    
T  14592085 tttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatccgcttactttctactctctttctttccttagacaatctttctt 14592184  T
Q  316 ttc 318  Q
    |||    
T  14592185 ttc 14592187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 29675437 - 29675360
Alignment:
Q  241 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttc 318  Q
    ||||| |||||||||||||||| | | ||||||  | |||||| |||| ||||||||||| ||| |||||||||||||    
T  29675437 actttctcttataccaaacaactaaaacaatcccatcactttctactctttttctttcctcatacaatctttcctttc 29675360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 321
Target Start/End: Complemental strand, 8249033 - 8248953
Alignment:
Q  241 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcacc 321  Q
    ||||||| ||| |||||||||||| | ||||||  | |||||||| ||  |||||||||| ||| ||||||||||||||||    
T  8249033 actttttattaaaccaaacaaccaaaacaatcccttcactttccattctctttctttcctcatacaatctttcctttcacc 8248953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 241 - 319
Target Start/End: Complemental strand, 1047913 - 1047835
Alignment:
Q  241 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttca 319  Q
    ||||| |||| ||||||||||| | | |||||||||| || || |||  |||||||||| |||| ||||||||||||||    
T  1047913 actttctcttgtaccaaacaactaaaacaatcctcttcctatctactatttttctttccctatacaatctttcctttca 1047835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 237 - 315
Target Start/End: Original strand, 25018225 - 25018303
Alignment:
Q  237 ctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    ||||||||| |||||||||||||||||| |  ||||| ||  | ||| |||| ||||||||||| ||| ||||||||||    
T  25018225 ctctactttctcttataccaaacaaccaaaataatcccctcgcattctactctttttctttcctcatacaatctttcct 25018303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 188; Significance: 1e-102; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 319
Target Start/End: Complemental strand, 45774871 - 45774545
Alignment:
Q  1 taacatagtggtgtattataaattttatgaatgtacagcttgtactagtagttaaattttaaa---------tcacagcagttaacttactaactatatt 91  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||         |||||| ||||||||||| ||||  |||    
T  45774871 taacatagtggtgtattataaattttatgaatatacagcttgtactagtagttaaattttaaaattttaaaatcacagtagttaacttaccaactgcatt 45774772  T
Q  92 taaaatttatnnnnnnnnntacttagaaataaataactaaatataattatgaatatacatcttccttttaacctatcaattatttttattcagggttata 191  Q
    |||| |||||         ||  ||||  |||||||||||||||||||||||||||||||||| |||| ||||||  ||||||||||||| |||||||||    
T  45774771 taaattttataaaataaa-tatgtagacgtaaataactaaatataattatgaatatacatctttctttaaacctacaaattatttttatttagggttata 45774673  T
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||    
T  45774672 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttctcttataccaaacaaccaaatcaatcctcttactttccactcatt 45774573  T
Q  292 ttctttccttatataatctttcctttca 319  Q
    |||||||| |||| ||||||||||||||    
T  45774572 ttctttccgtatacaatctttcctttca 45774545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 126; E-Value: 7e-65
Query Start/End: Original strand, 115 - 320
Target Start/End: Original strand, 7269497 - 7269701
Alignment:
Q  115 tagaaataaataactaaatataattatgaatatacatcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatat 214  Q
    ||||| ||||||||||| ||||||||||||| || ||||| ||||| | | |||| |||| |||||  ||||||||||||||||||||||||||||||||    
T  7269497 tagaagtaaataactaa-tataattatgaatgtatatctttcttttcatcaatcagttatatttatatagggttatatatgtcaattactaaaaatatat 7269595  T
Q  215 gtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcc 314  Q
    ||||||||||||||||||||||| | ||||| |||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||| |||||||||    
T  7269596 gtttctttcctttcactttcttccccactttctcttgtaccaaacaaccaaatcaatcttcttactttccactcattttctttccttatacaatctttcc 7269695  T
Q  315 tttcac 320  Q
    ||||||    
T  7269696 tttcac 7269701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 318
Target Start/End: Original strand, 7330882 - 7331012
Alignment:
Q  188 tatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccact 287  Q
    |||||||||||||||||||||||| ||  ||||||| |   |||||||  || ||||| ||||| ||||||||| || | ||||||||| ||||||||||    
T  7330882 tatatatgtcaattactaaaaatagatcattctttcttcaaactttctaatccactttctcttaaaccaaacaatcaaaacaatcctctcactttccact 7330981  T
Q  288 cattttctttccttatataatctttcctttc 318  Q
    |   ||||||||| ||| |||||||| ||||    
T  7330982 ctccttctttcctcatacaatctttcttttc 7331012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 216 - 315
Target Start/End: Original strand, 31543492 - 31543591
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    ||||||||||||||||||||   | ||||| |||||||||||||||||| | ||||||  ||| |||| ||| | |||||||||||| | ||||||||||    
T  31543492 tttctttcctttcactttctaacccactttctcttataccaaacaaccataacaatccctttattttctacttactttctttccttacacaatctttcct 31543591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 28850029 - 28850150
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||||||||||| ||  |||||||||   ||||||   || ||||| ||||| |||||||||||| | ||||| ||| |||||||||||       
T  28850029 tatgtcaattactaaaaatagatcattctttcctcaaactttcgaatccactttctcttaaaccaaacaaccaaaacaatcatctcactttccactctca 28850128  T
Q  292 ttctttccttatataatctttc 313  Q
    || |||||| ||| ||||||||    
T  28850129 ttttttcctcatacaatctttc 28850150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 30675694 - 30675644
Alignment:
Q  252 taccaaacaaccagatcaatcctcttactttccactcattttctttcctta 302  Q
    ||||||||||||| | ||||||||| |||||| |||| |||||||||||||    
T  30675694 taccaaacaaccaaaacaatcctctcactttctactctttttctttcctta 30675644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 216 - 318
Target Start/End: Original strand, 34721015 - 34721117
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    |||||||||| | |||||||  | |||||| |||| || ||||||| || | ||||| |||||||||| |||   |||||||||||  ||||||||||||    
T  34721015 tttctttcctcttactttctattatactttctcttgtatcaaacaatcataacaatcatcttactttctactttctttctttccttgcataatctttcct 34721114  T
Q  316 ttc 318  Q
    |||    
T  34721115 ttc 34721117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 10723678 - 10723799
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||||| | ||| || |||||||||||  |||||||  || ||||| | |||||||||||||| | |  ||||| || ||||||  |||  |    
T  10723678 tatgtcaattactatatatagatctttctttccttcaactttctattccactttctattataccaaacaactaaaataatcccctcactttctcctctct 10723777  T
Q  292 ttctttccttatataatctttc 313  Q
    ||||||||| ||| ||||||||    
T  10723778 ttctttcctcatacaatctttc 10723799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 209 - 301
Target Start/End: Complemental strand, 12406159 - 12406068
Alignment:
Q  209 atatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttcctt 301  Q
    |||||| |||||||||||||||||| || || |||||  ||||||||||||||| | |  |||| ||| |||||| ||||| |||| ||||||    
T  12406159 atatatctttctttcctttcacttttttatc-actttcacttataccaaacaactaaaataatcatctcactttctactcactttcattcctt 12406068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 131 - 320
Target Start/End: Original strand, 925643 - 925832
Alignment:
Q  131 aatataattatgaatatacatcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcac 230  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  925643 aatataattatgaatatacatctttcttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatacatgtttctttcctttcac 925742  T
Q  231 tttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 320  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |||| |||||||||| |||||||||||||||    
T  925743 tttcttctctactttctcttataccaaacaaccaaatcaatcctcttactttccactctttttttttccttatacaatctttcctttcac 925832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 6191914 - 6191788
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||||||||||| ||  |||||||||   ||||| |  || ||||| ||||| |||||||||||| | ||||||||| ||||||||||| |     
T  6191914 tatgtcaattactaaaaatagatcattctttcctcaaactttttaatccactttctcttaaaccaaacaaccaaaacaatcctctcactttccactcttc 6191815  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||||||||| |||||||||||| ||||    
T  6191814 ttctttcctcatataatctttcttttc 6191788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 170 - 313
Target Start/End: Original strand, 31642467 - 31642610
Alignment:
Q  170 attatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatca 269  Q
    |||||||||||||| || ||| ||||||||| | |||| ||| || |||||||||||  ||||||| || |||||| | |||||||||||||||| | ||    
T  31642467 attatttttattcaagggtatttatgtcaatcaataaatatagatctttctttccttcaactttctactttactttcttttataccaaacaaccaaaaca 31642566  T
Q  270 atcctcttactttccactcattttctttccttatataatctttc 313  Q
    ||||| | |||||||||||  ||| ||| || ||| ||||||||    
T  31642567 atcctttcactttccactctctttattttctcatacaatctttc 31642610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 3601896 - 3601770
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||| |||  ||| | |||||||||||  | ||||| ||| ||||| | || || |||||||||| | ||||||||| |||||| |||| ||    
T  3601896 tatgtcaattaccaaatgtatgtttttctttccttcaattttctactccactttcttttgtatcaaacaaccaaaacaatcctctcactttctactcttt 3601797  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||||||||||| | |||||||||||||    
T  3601796 ttctttccttaaacaatctttcctttc 3601770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 13481546 - 13481424
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||  ||| ||| || ||||||||||   |||||||  || |||||  ||| ||||||||||||| | ||||||||| |||||| |||| ||    
T  13481546 tatgtcaattagaaaatatagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctcactttctactcttt 13481447  T
Q  292 ttctttccttatataatctttcc 314  Q
    ||||||||||| | |||||||||    
T  13481446 ttctttccttagacaatctttcc 13481424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 29078494 - 29078370
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||  ||| ||  || |||||||||||  |||||||  || ||||| | |||||||||||||||| | |||||| || |||||| | || ||    
T  29078494 tatgtcaattaaaaaatatggatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctcactttctattcctt 29078395  T
Q  292 ttctttccttatataatctttcctt 316  Q
    |||||| || || ||||||||||||    
T  29078394 ttcttttctcatttaatctttcctt 29078370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 157; Significance: 2e-83; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 119 - 320
Target Start/End: Original strand, 33858791 - 33858996
Alignment:
Q  119 aataaataactaaatataattatgaatatacatcttcctttt----aacctatcaattatttttattcagggttatatatgtcaattactaaaaatatat 214  Q
    ||||||||||||||||||||||||||||||||| || |||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33858791 aataaataactaaatataattatgaatatacatatttcttttttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatat 33858890  T
Q  215 gtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcc 314  Q
    ||||||||| |||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||     
T  33858891 gtttctttcttttcactttcttctttactttctcttataccaaacaaccaaatcaatcctcttactttccactcattttctttccttatacaatctttcg 33858990  T
Q  315 tttcac 320  Q
    ||||||    
T  33858991 tttcac 33858996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 33858178 - 33858230
Alignment:
Q  9 tggtgtattataaattttatgaatgtacagcttgtactagtagttaaatttta 61  Q
    |||||||||||||||||||||||| |||| |||||||||||||||||||||||    
T  33858178 tggtgtattataaattttatgaatatacaccttgtactagtagttaaatttta 33858230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 216 - 316
Target Start/End: Original strand, 34516340 - 34516440
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    |||||||||||| ||||||   || ||||| | |||||||||||||||| | ||||||||| |||||| | || ||||||||||| ||||||||||||||    
T  34516340 tttctttcctttaactttccattccactttcttttataccaaacaaccaaaacaatcctctcactttctattctttttctttcctcatataatctttcct 34516439  T
Q  316 t 316  Q
    |    
T  34516440 t 34516440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 318
Target Start/End: Original strand, 24167233 - 24167358
Alignment:
Q  193 atgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattt 292  Q
    |||||||||||||||  ||| | ||||||||||   |||||||  || | ||| |||| ||||||||||||| |  |||| |||||||||| ||||  ||    
T  24167233 atgtcaattactaaatttatgtctttctttcctccaactttctattccagtttctcttgtaccaaacaaccaaaataatcatcttactttctactctctt 24167332  T
Q  293 tctttccttatataatctttcctttc 318  Q
    |||||||||| | |||||||||||||    
T  24167333 tctttccttagacaatctttcctttc 24167358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 249 - 316
Target Start/End: Original strand, 13201484 - 13201551
Alignment:
Q  249 ttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctt 316  Q
    ||||||||||||| || | ||||||||||||| || | || |||||||||||  ||||||||||||||    
T  13201484 ttataccaaacaatcaaaacaatcctcttactctctattctttttctttcctcttataatctttcctt 13201551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 130; Significance: 3e-67; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 115 - 320
Target Start/End: Original strand, 8051470 - 8051675
Alignment:
Q  115 tagaaataaataactaaatataattatgaatatacatcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatat 214  Q
    ||||| ||||||||||||||||||||||||| || ||||| ||||| ||| ||||||||| |||||  ||| ||||||||||||||||||||||||||||    
T  8051470 tagaagtaaataactaaatataattatgaatgtatatctttcttttcaccaatcaattatatttatataggattatatatgtcaattactaaaaatatat 8051569  T
Q  215 gtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcc 314  Q
    |||| |||||||||||||||||||| ||||| |||| ||||||||||||| ||||||| |||||||||  |||||||||||||||||||| |||||||||    
T  8051570 gtttatttcctttcactttcttctccactttctcttgtaccaaacaaccaaatcaatcttcttacttttgactcattttctttccttatacaatctttcc 8051669  T
Q  315 tttcac 320  Q
    ||||||    
T  8051670 tttcac 8051675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 16220742 - 16220869
Alignment:
Q  192 tatgtcaattactaaaaa-tatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcat 290  Q
    ||||||||||| |||||| || || |||||||||||| |||||||  || ||||| |||||||||||||| ||| | ||||||| | |||||| |||| |    
T  16220742 tatgtcaattattaaaaaatagatctttctttcctttaactttctattccactttctcttataccaaacatccaaaacaatcctttcactttctactctt 16220841  T
Q  291 tttctttccttatataatctttcctttc 318  Q
    |||||||||||||| |||||||||||||    
T  16220842 tttctttccttatacaatctttcctttc 16220869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 26724685 - 26724811
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| |||| |||||| |||||||||||| |||||||  |||||||| |||| ||||||||||||| | ||||| ||| |||||| ||||  |    
T  26724685 tatgtcaattaataaagatatatctttctttccttttactttctattctactttctcttttaccaaacaaccataacaatcatctcactttctactctct 26724784  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||| ||||||| | |||||||||||||    
T  26724785 ttcattccttacacaatctttcctttc 26724811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 192 - 318
Target Start/End: Original strand, 30203239 - 30203365
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| |||| |||||| |||||||||| | |||||||  |||||||| |||| ||||||||||||| | ||||| ||| |||||| ||||  |    
T  30203239 tatgtcaattaataaagatatatctttctttcctcttactttctattctactttctcttttaccaaacaaccataacaatcatctcactttctactctct 30203338  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||| ||||||| | |||||||||||||    
T  30203339 ttcattccttacacaatctttcctttc 30203365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 315
Target Start/End: Original strand, 41313019 - 41313152
Alignment:
Q  182 cagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactt 281  Q
    ||||| ||| |||||||||||  ||| ||| || ||||||||||||||||||||  |  ||||| |||||||||||||||||| | ||||||  | | ||    
T  41313019 cagggatatttatgtcaattaaaaaatatagatctttctttcctttcactttctaattcactttctcttataccaaacaaccataacaatcccttcattt 41313118  T
Q  282 tccactcattttctttccttatataatctttcct 315  Q
    || ||| | |||||||||||| | ||||||||||    
T  41313119 tctacttactttctttccttacagaatctttcct 41313152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 192 - 288
Target Start/End: Complemental strand, 37810257 - 37810161
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactc 288  Q
    |||||||||||||||||||| ||  |||||||||   |||||||  || ||||| ||||| |||||||||||| | ||||||||| |||||||||||    
T  37810257 tatgtcaattactaaaaataaatcattctttcctcaaactttctaatcgactttctcttaaaccaaacaaccaaaacaatcctctcactttccactc 37810161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 183 - 315
Target Start/End: Complemental strand, 3460860 - 3460728
Alignment:
Q  183 agggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttacttt 282  Q
    |||| ||| ||||||| || | ||| ||| || |||||||||| |||||||||  || ||||| |||||||||||||||||| | |||| |  | | |||    
T  3460860 aggggtatttatgtcagttgcaaaatataaatctttctttcctctcactttctaatccactttctcttataccaaacaaccataacaattccttcatttt 3460761  T
Q  283 ccactcattttctttccttatataatctttcct 315  Q
    | ||| | |||||||||||| | ||||||||||    
T  3460760 ctacttactttctttccttacacaatctttcct 3460728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 302
Target Start/End: Original strand, 39566096 - 39566146
Alignment:
Q  252 taccaaacaaccagatcaatcctcttactttccactcattttctttcctta 302  Q
    ||||||||||||| | ||||||||| |||||| |||| |||||||||||||    
T  39566096 taccaaacaaccaaaacaatcctctcactttctactctttttctttcctta 39566146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 122; Significance: 2e-62; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 115 - 320
Target Start/End: Complemental strand, 26108751 - 26108546
Alignment:
Q  115 tagaaataaataactaaatataattatgaatatacatcttccttttaacctatcaattatttttattcagggttatatatgtcaattactaaaaatatat 214  Q
    ||||| ||||||| ||||||||||||||||| || ||||| ||||| ||| ||||||||| |||||  ||||||||||||||||||||  ||||||| ||    
T  26108751 tagaagtaaataattaaatataattatgaatgtatatctttcttttcaccaatcaattatatttatatagggttatatatgtcaattaggaaaaatacat 26108652  T
Q  215 gtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcc 314  Q
    ||||||||||||||||||||||||| ||||| |||||||||||||||||| || ||||||||||||||||| ||| ||||||| |||||| |||||||||    
T  26108651 gtttctttcctttcactttcttctccactttctcttataccaaacaaccaaattaatcctcttactttccattcactttcttttcttatacaatctttcc 26108552  T
Q  315 tttcac 320  Q
    ||||||    
T  26108551 tttcac 26108546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 192 - 313
Target Start/End: Original strand, 19555205 - 19555326
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||||||||  ||| | |||||||||||  |||||||  || ||||| | |||||||||||||||| | ||||| |||||||||| |||| ||    
T  19555205 tatgtcaattactaaatttatgtctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcttcttactttctactcttt 19555304  T
Q  292 ttctttccttatataatctttc 313  Q
    ||||||||||| | ||||||||    
T  19555305 ttctttccttagacaatctttc 19555326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 172 - 317
Target Start/End: Original strand, 4921442 - 4921587
Alignment:
Q  172 tatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaat 271  Q
    |||||||||||| || ||| ||||||| ||| |||| ||  || |||||||||||| ||||| | || |||||| | | |||||||||||||| | ||||    
T  4921442 tatttttattcaaggatatttatgtcagttaataaatatgaatctttctttcctttaactttttactttactttctttaataccaaacaaccaaaacaat 4921541  T
Q  272 cctcttactttccactcattttctttccttatataatctttccttt 317  Q
    || || | |||||||||  ||||||| || ||| ||||||||||||    
T  4921542 cccctcattttccactctctttcttttctcatacaatctttccttt 4921587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 172 - 317
Target Start/End: Complemental strand, 41697448 - 41697303
Alignment:
Q  172 tatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaat 271  Q
    |||||||||||| || ||| ||||||| ||| |||| ||  || |||||||||||| ||||| | || |||||| | | |||||||||||||| | ||||    
T  41697448 tatttttattcaaggatatttatgtcagttaataaatatgaatctttctttcctttaactttttactttactttctttaataccaaacaaccaaaacaat 41697349  T
Q  272 cctcttactttccactcattttctttccttatataatctttccttt 317  Q
     | |||| ||| |||||  ||||||| || ||| ||||||||||||    
T  41697348 tcccttatttttcactctctttcttttctcatacaatctttccttt 41697303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 190 - 297
Target Start/End: Complemental strand, 43229297 - 43229190
Alignment:
Q  190 tatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactca 289  Q
    ||||||||||||||||||  ||  | ||| |||||||  |||||||  || ||||| |||||||||||||||| | | |||||||||||||||| ||||     
T  43229297 tatatgtcaattactaaatttaggtctttgtttccttcaactttctattccactttctcttataccaaacaactaaaacaatcctcttactttctactct 43229198  T
Q  290 ttttcttt 297  Q
    | ||||||    
T  43229197 tcttcttt 43229190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 247 - 318
Target Start/End: Complemental strand, 20654733 - 20654662
Alignment:
Q  247 tcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttc 318  Q
    ||||| |||||||||||| | ||||||||| ||||||||||| | ||| ||||| ||| |||||||| ||||    
T  20654733 tcttaaaccaaacaaccaaaacaatcctctcactttccactcctcttcgttcctcatacaatctttcttttc 20654662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 39144524 - 39144425
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    |||||||||||| | |||||  || ||||| | || ||||||||||||| | ||||||  |||||||| | || |||||||| || ||||||||||||||    
T  39144524 tttctttcctttaattttctattccactttcttttgtaccaaacaaccaaaacaatccctttactttctattctttttcttttctcatataatctttcct 39144425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 3e-21; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 36119526 - 36119650
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| |||| |||||| |||||||||||  |||||||  || ||||| | |||||||||||||||| | ||||||||| | |||| | || ||    
T  36119526 tatgtcaattaataaatatatatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcctctcattttctattcttt 36119625  T
Q  292 ttctttccttatataatctttcctt 316  Q
    ||||||||| |||||||||||||||    
T  36119626 ttctttcctcatataatctttcctt 36119650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 182 - 315
Target Start/End: Complemental strand, 31518491 - 31518358
Alignment:
Q  182 cagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactt 281  Q
    ||||| ||| |||||||||||  ||| ||| || ||||||||||||||||||||  || ||||| ||||||||||||||||||   ||||||  ||| ||    
T  31518491 caggggtatttatgtcaattaaaaaatatagatctttctttcctttcactttctaatccactttatcttataccaaacaaccatgacaatccctttattt 31518392  T
Q  282 tccactcattttctttccttatataatctttcct 315  Q
    || ||| | |||||||||||| | ||||||||||    
T  31518391 tctacttactttctttccttacacaatctttcct 31518358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 216 - 320
Target Start/End: Complemental strand, 48706976 - 48706872
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcct 315  Q
    ||||||||||   |||||||  || ||||| |||| ||||||||||||| | ||||||||| |||||| |||| || |||||||||| | ||||||||||    
T  48706976 tttctttcctccaactttctattccactttctcttgtaccaaacaaccaaaacaatcctctcactttctactctttctctttccttagacaatctttcct 48706877  T
Q  316 ttcac 320  Q
    |||||    
T  48706876 ttcac 48706872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 5385834 - 5385728
Alignment:
Q  211 atatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatct 310  Q
    |||| |||||||||| | |||||||| |||||||| |||| ||||||||||||| | ||||| ||| |||||| ||||  |||| ||||||| | |||||    
T  5385834 atatctttctttcctcttactttctt-tctactttctcttctaccaaacaaccataacaatcatctcactttctactctctttcattccttacacaatct 5385736  T
Q  311 ttcctttc 318  Q
    ||||||||    
T  5385735 ttcctttc 5385728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 192 - 318
Target Start/End: Complemental strand, 7138866 - 7138740
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||||||||||||||  || ||||||   ||| |||  || ||||| ||||| ||||||||| || | ||||||||| |||||||||||       
T  7138866 tatgtcaattactaaaaatatatcattttttcctcaaactgtctaatccactttctcttaaaccaaacaatcaaaacaatcctctcactttccactctca 7138767  T
Q  292 ttctttccttatataatctttcctttc 318  Q
    ||||||||| ||| |||||||| ||||    
T  7138766 ttctttcctcatacaatctttcttttc 7138740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 238 - 320
Target Start/End: Complemental strand, 54801740 - 54801658
Alignment:
Q  238 tctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcac 320  Q
    |||||||| |||| |||||||||| || | |||||||||||||||| ||||  |||||||||||  | |||||||||||||||    
T  54801740 tctactttctcttgtaccaaacaatcataacaatcctcttactttctactctctttctttccttgcacaatctttcctttcac 54801658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 53849377 - 53849505
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| |||| | |||| ||||||| || | ||||| |  |||||||| |||| ||||||||||||| | ||||  | | |||||| ||||  |    
T  53849377 tatgtcaattaataaatacatatctttcttttctcttactttttattctactttctcttttaccaaacaaccataacaattatttaactttctactctct 53849476  T
Q  292 ttctttccttatataatctttcctttcac 320  Q
    ||| ||||||| |||||||||||||||||    
T  53849477 ttcattccttacataatctttcctttcac 53849505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 316
Target Start/End: Original strand, 10310386 - 10310510
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||  ||| ||  || |||||||||||  |||||||  || ||||| | |||||||||||||||| | |||||| || |||||| | |  ||    
T  10310386 tatgtcaattaaaaaatatggatctttctttccttcaactttctattccactttcttttataccaaacaaccaaaacaatcccctcactttctatttttt 10310485  T
Q  292 ttctttccttatataatctttcctt 316  Q
    ||||||||| || ||||||||||||    
T  10310486 ttctttcctcatttaatctttcctt 10310510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 168 - 264
Target Start/End: Complemental strand, 23544239 - 23544143
Alignment:
Q  168 caattatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaacca 264  Q
    |||||| || |||||| || ||| ||||| ||||| |||| |||||| |||||||||||  |||||||  || ||||| | ||||||||||||||||    
T  23544239 caattacttctattcaagggtatttatgttaattaataaatatatatctttctttccttcaactttctattccactttcttttataccaaacaacca 23544143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 314
Target Start/End: Complemental strand, 48035476 - 48035403
Alignment:
Q  241 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcc 314  Q
    ||||| |||||||| ||||||||| |  ||||| || |||||| |||| ||||||||||| ||| |||||||||    
T  48035476 actttctcttatacgaaacaaccaaaataatcccctcactttctactccttttctttcctcatacaatctttcc 48035403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 216 - 264
Target Start/End: Original strand, 51333027 - 51333074
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaacca 264  Q
    |||||||||||||||||||||||| |||||   ||||||||||||||||    
T  51333027 tttctttcctttcactttcttctc-actttcatttataccaaacaacca 51333074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 6e-19; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 192 - 316
Target Start/End: Complemental strand, 39878726 - 39878602
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    ||||||||||| |||| |||||| |||||||||||  |||||||  || | ||| | |||||||||||||||| | ||||||||| | |||| | || ||    
T  39878726 tatgtcaattaataaatatatatctttctttccttcaactttctattccattttcttttataccaaacaaccaaaacaatcctctcattttctattcttt 39878627  T
Q  292 ttctttccttatataatctttcctt 316  Q
    ||||||||| |||||||||||||||    
T  39878626 ttctttcctcatataatctttcctt 39878602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 170 - 318
Target Start/End: Original strand, 22491686 - 22491834
Alignment:
Q  170 attatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatca 269  Q
    |||||||||||| | || |||  ||||||||||||| |  || || |||||||||||  ||||||| ||| ||||| |||| ||||||||||||| | ||    
T  22491686 attatttttatttaagggtattaatgtcaattactacatttagatctttctttccttaaactttctactccactttctcttgtaccaaacaaccaaaaca 22491785  T
Q  270 atcctcttactttccactcattttctttccttatataatctttcctttc 318  Q
    ||||||||||||||  |||  ||| |||||||| | |||||||| ||||    
T  22491786 atcctcttactttctgctctctttttttccttagacaatctttcttttc 22491834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 195 - 318
Target Start/End: Original strand, 33055485 - 33055608
Alignment:
Q  195 gtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttc 294  Q
    |||||||| |||| ||| || ||||||| |||| || |||| ||  ||||| |||||||||||||||| | | ||||| ||| |||||| |||| ||| |    
T  33055485 gtcaattattaaatatagatctttcttttctttaacattctacttcactttctcttataccaaacaactaaaacaatcatctcactttctactcttttac 33055584  T
Q  295 tttccttatataatctttcctttc 318  Q
    |||||| ||| |||||||||||||    
T  33055585 tttcctcatacaatctttcctttc 33055608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 209 - 315
Target Start/End: Original strand, 25750192 - 25750298
Alignment:
Q  209 atatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataat 308  Q
    |||||| |||||||| ||| ||| ||  ||||||||| |||||||||||||||||| |  ||||| || || ||| |||| ||||||||||| ||| |||    
T  25750192 atatatctttctttcttttaactatccactctactttctcttataccaaacaaccaaaataatcccctcacattctactctttttctttcctcatacaat 25750291  T
Q  309 ctttcct 315  Q
    |||||||    
T  25750292 ctttcct 25750298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 193 - 318
Target Start/End: Complemental strand, 29272862 - 29272737
Alignment:
Q  193 atgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattt 292  Q
    |||||||||||||||  || || ||||||| | |  ||||| |  |||||||| |||| ||||||||||||| | |||||||||| ||||  ||||  ||    
T  29272862 atgtcaattactaaatttagatctttcttttcatcaactttttattctactttctcttgtaccaaacaaccaaaacaatcctcttgctttttactctctt 29272763  T
Q  293 tctttccttatataatctttcctttc 318  Q
    |||||||||| | |||||||||||||    
T  29272762 tctttccttagacaatctttcctttc 29272737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 216 - 313
Target Start/End: Complemental strand, 41085078 - 41084981
Alignment:
Q  216 tttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttc 313  Q
    ||||||||||   |||||||  || ||||| |||||||||||||||||| |  ||||||||||||||| |||| |||||||||| || | ||||||||    
T  41085078 tttctttcctccaactttctattccactttctcttataccaaacaaccaaaataatcctcttactttctactctttttctttccctagacaatctttc 41084981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 320
Target Start/End: Original strand, 45225694 - 45225822
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||| ||||||| || |||||||||||  | |||||  || ||||| | ||| |||||||||||| | |||||   | |||||||||||  |    
T  45225694 tatgtcaattacaaaaaatagatttttctttccttcaattttctaatccactttctattaaaccaaacaaccaaaacaatcacttcactttccactccct 45225793  T
Q  292 ttctttccttatataatctttcctttcac 320  Q
    ||||||||| |||  ||||||||||||||    
T  45225794 ttctttcctcataccatctttcctttcac 45225822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 170 - 316
Target Start/End: Original strand, 3765668 - 3765814
Alignment:
Q  170 attatttttattcagggttatatatgtcaattactaaaaatatatgtttctttcctttcactttct-tctctactttttcttataccaaacaaccagatc 268  Q
    ||||||||| || | |||||| |||||||| || ||||  ||  | |||||||||||  ||||||| |||| | ||| |||||||| ||||||||| | |    
T  3765668 attatttttgtttaaggttatttatgtcaactattaaatgtaggtctttctttccttcaactttctatctc-attttctcttatactaaacaaccaaaac 3765766  T
Q  269 aatcctcttactttccactcattttctttccttatataatctttcctt 316  Q
    | || |||||||||| | |||||||||||||||| | |||||||||||    
T  3765767 attcatcttactttctattcattttctttccttaaacaatctttcctt 3765814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 241 - 318
Target Start/End: Complemental strand, 45223689 - 45223612
Alignment:
Q  241 actttttcttataccaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttc 318  Q
    ||||| |||||||||||||||| | | ||||||||| |||||| |||| ||| |||| || ||| |||||||||||||    
T  45223689 actttctcttataccaaacaactaaaacaatcctctcactttctactcttttacttttctcatacaatctttcctttc 45223612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 321
Target Start/End: Original strand, 45024740 - 45024808
Alignment:
Q  253 accaaacaaccagatcaatcctcttactttccactcattttctttccttatataatctttcctttcacc 321  Q
    |||||||||||| | ||||||  |  ||||||| ||  |||||||||| ||||||||||||||||||||    
T  45024740 accaaacaaccaaaacaatcccttcgctttccattctctttctttcctcatataatctttcctttcacc 45024808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0294 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 192 - 312
Target Start/End: Complemental strand, 2226 - 2106
Alignment:
Q  192 tatgtcaattactaaaaatatatgtttctttcctttcactttcttctctactttttcttataccaaacaaccagatcaatcctcttactttccactcatt 291  Q
    |||||||||||| |||  || || ||||||||||   |||||||  || |||||  ||| ||||||||||||| | ||||||||| |||||| |||| ||    
T  2226 tatgtcaattacaaaatgtagatctttctttcctccaactttctattccactttcccttgtaccaaacaaccaaaacaatcctctcactttctactcttt 2127  T
Q  292 ttctttccttatataatcttt 312  Q
    ||||||||||| | |||||||    
T  2126 ttctttccttagacaatcttt 2106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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