View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8079_low_1 (Length: 446)
Name: NF8079_low_1
Description: NF8079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8079_low_1 |
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| [»] scaffold0493 (1 HSPs) |
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Alignment Details
Target: scaffold0493 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: scaffold0493
Description:
Target: scaffold0493; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 107 - 429
Target Start/End: Original strand, 7538 - 7859
Alignment:
| Q |
107 |
gttgtttcggacaaccatgtagctaaattcgtgatagttgttaatttgtcattttagcttccaccaacgtaaaaatctaatcaagtccacggtcagtatt |
206 |
Q |
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| T |
7538 |
gttgtttcggacaaccatgtagctaaattcgtgatagttgttaatttgtcattttagcttccaccaacgtaagaatctaatcaagtccacggtcagtatt |
7637 |
T |
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| Q |
207 |
ttctgctatacttccattccgtggttttttattaaccttaaaaccttttcattatatcattgttcaatttttcattcttgaaattctgcatcctctaatg |
306 |
Q |
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| T |
7638 |
ttctgctatacttccattccgtggttttttattaaccttaaa-ccttgtcattatatcattgttcaattttttattcttgaaattctgcatcctctaatg |
7736 |
T |
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| Q |
307 |
gctctctctgcaacatttatcgctacttcaccttcaagttctaacctttacaccaaatttcgcaaaccctttctctctcactctgtttatcttcttaaac |
406 |
Q |
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| T |
7737 |
gctctctctgcaacattcatcactccttcaccttcaagttctaacctttacaccaaatttcgcaaaccctttctctctcactctgtttatcttcttaaac |
7836 |
T |
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| Q |
407 |
cctttaagatccgagcttcaact |
429 |
Q |
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| T |
7837 |
cctttaagatccgagcttcaact |
7859 |
T |
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