View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8079_low_3 (Length: 262)

Name: NF8079_low_3
Description: NF8079
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8079_low_3
NF8079_low_3
[»] chr8 (6 HSPs)
chr8 (1-247)||(40589764-40590010)
chr8 (1-149)||(479121-479269)
chr8 (6-149)||(43319084-43319227)
chr8 (1-149)||(7126195-7126343)
chr8 (1-129)||(8452115-8452243)
chr8 (84-141)||(38297279-38297336)
[»] chr1 (1 HSPs)
chr1 (1-145)||(5608297-5608441)
[»] chr2 (2 HSPs)
chr2 (1-145)||(87333-87477)
chr2 (1-149)||(39828994-39829142)
[»] chr4 (8 HSPs)
chr4 (1-145)||(55733986-55734130)
chr4 (1-149)||(49950295-49950443)
chr4 (1-146)||(2063747-2063892)
chr4 (1-149)||(56062974-56063122)
chr4 (1-141)||(28538851-28538991)
chr4 (1-144)||(28425172-28425315)
chr4 (1-149)||(51260596-51260741)
chr4 (1-141)||(26423229-26423369)
[»] chr6 (3 HSPs)
chr6 (4-149)||(11732715-11732860)
chr6 (5-126)||(19365008-19365129)
chr6 (1-60)||(15607068-15607127)
[»] chr5 (2 HSPs)
chr5 (5-149)||(20203932-20204076)
chr5 (31-149)||(8387053-8387171)
[»] chr7 (2 HSPs)
chr7 (1-132)||(16096328-16096459)
chr7 (1-149)||(3746221-3746370)


Alignment Details
Target: chr8 (Bit Score: 179; Significance: 1e-96; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 40589764 - 40590010
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40589764 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 40589863  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggtgcggtatttttttgaaaattcagattcatatcnnnnnnnnnnnnnnnnaaa 200  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||||||||| |||||||||                |||    
T  40589864 aaaagtatctgacgcaaattccaaatactccgccaagcaaagctcgggtgcagtatttttttgaaaattcatattcatatcttttttaattttttttaaa 40589963  T
Q  201 ttcgtattcatatcttttttatataacaataatataaataaaaatat 247  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  40589964 ttcgtattcatatcttttttatataacaataatataaatataaatat 40590010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 479121 - 479269
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||| || ||||||||||||||||||| ||| |||||||||||| | ||||||    
T  479121 ttgtggggattgaatccagctaccgtgaacacctcgaacccatggatcatttataacgctgacctgctgcccatgtccaattgtccacctagaaccatgt 479220  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    ||||||| ||||| | || |||||||||||| |||| ||||||||||||    
T  479221 aaaagtagctgacacgaagtccaaatactccgccaagcaaagctcgggt 479269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 6 - 149
Target Start/End: Original strand, 43319084 - 43319227
Alignment:
Q  6 gggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaag 105  Q
    |||||||||||||||| || |||||||||||||||||||| |||||||| |||||||| |||| ||||| ||| |||||||||||| | |||||||||||    
T  43319084 gggattgaatccagctgccgtgaacacctcgaacccatggatcattcataacgctgacatgcttcccatgtccaattgtccacctaaaaccatgtaaaag 43319183  T
Q  106 tatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    || ||||||| || |||||||||||| |||| ||||||||||||    
T  43319184 tagctgacgcgaagtccaaatactccgccaagcaaagctcgggt 43319227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 7126343 - 7126195
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| || ||||||||||| ||||| || ||||||  ||| || ||||| ||||| |||| |    
T  7126343 ttgtggggattgaatccagctaccgtgaacacctcgaacccacggatcattcatcacactgacatgttgcccacgtccaatcgtccatctacacccatat 7126244  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    |||||||  || ||| ||||||||||||| | |||| ||||||||||||    
T  7126243 aaaagtaaatgtcgcgaattccaaatacttcgccaagcaaagctcgggt 7126195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 8452115 - 8452243
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||| || || ||||||||||||| |||||  ||||||||||| || ||||||||||||| ||| |||||||||||||||| || |    
T  8452115 ttgtggggattgaatccaactgccatgaacacctcgaatccatgaatcattcatcacactaacctgctgcccatatccaattgtccacctacatcaatat 8452214  T
Q  101 aaaagtatctgacgcaaattccaaatact 129  Q
    || |||| ||||| | ||||| |||||||    
T  8452215 aatagtaactgacacgaattctaaatact 8452243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 38297279 - 38297336
Alignment:
Q  84 tccacctacatccatgtaaaagtatctgacgcaaattccaaatactccaccaaacaaa 141  Q
    ||||||||||||||| |||||| || |||||| ||||||||||||| | |||||||||    
T  38297279 tccacctacatccatttaaaagaatttgacgcgaattccaaatacttctccaaacaaa 38297336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 5608441 - 5608297
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||| ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||    
T  5608441 ttgtggggattgaatctagctaccttgaactccacgaacccatgggtcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatgt 5608342  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctc 145  Q
    ||||||||||||||| ||||||||||||| | |||| ||||||||    
T  5608341 aaaagtatctgacgcgaattccaaatacttctccaagcaaagctc 5608297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 2e-52; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 87477 - 87333
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | ||| |||||||||||||||    
T  87477 ttgtggggattgaatacagctaccttgaacacctcgaacccatggatcattcatcacgctaacctgctgcccatttccaactgttcacctacatccatgt 87378  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctc 145  Q
    ||||||||||||||| ||||||| ||||||| |||| ||||||||    
T  87377 aaaagtatctgacgcgaattccatatactccgccaagcaaagctc 87333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 39828994 - 39829142
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||||||| ||||||| ||| || ||||| ||||| |||| |    
T  39828994 ttgtggggattgaatccagctaccgtgaacacctcgaacccacggatcattcatcacgctgacctgttgcccatctccaatcgtccatctacaaccatat 39829093  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    ||||||| ||||| | ||||||||||||||| |||| ||||||| ||||    
T  39829094 aaaagtaactgacacgaattccaaatactccgccaagcaaagcttgggt 39829142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 97; Significance: 9e-48; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 1 - 145
Target Start/End: Complemental strand, 55734130 - 55733986
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| | ||||||||||||||||| |    
T  55734130 ttgtggggattgaatccagctaccttgaacacctcgtacccatggatcattcatcacgctgacctgctgcccatttccaactgtccacctacatccatat 55734031  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctc 145  Q
    ||||| | ||||||  ||||||||||||||| |||| ||| ||||    
T  55734030 aaaagcaactgacgtgaattccaaatactccgccaagcaatgctc 55733986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 49950443 - 49950295
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||| ||||||||| |||||||||||||||  ||||    
T  49950443 ttgtggggattgaatccagctaccttgaacacctcgaacccatggatcattcatcacgttgacatgctacccatttccaattgtccacctacatttatgt 49950344  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    |||||||  | |||| |||||||||||||||  ||| ||||||||||||    
T  49950343 aaaagtaattcacgcgaattccaaatactccgtcaagcaaagctcgggt 49950295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 146
Target Start/End: Complemental strand, 2063892 - 2063747
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||| | |||||| |||||||||||| |    
T  2063892 ttgtggggattggatccaactaccttgaacacctcgaacccatggatcatttatcacgctgacatgctgcccattttcaattgtctacctacatccatat 2063793  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcg 146  Q
    ||||||| ||||||  |||||||||||||||| ||| |||||||||    
T  2063792 aaaagtagctgacgtgaattccaaatactccatcaagcaaagctcg 2063747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 56063122 - 56062974
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    ||||||||||||||||||| | ||  ||  ||||||||||||||| |||||||||||||||||||||||||||||| | |||||||| |||||||||| |    
T  56063122 ttgtggggattgaatccagtttccacgagtacctcgaacccatggatcattcatcacgctgacctgctgcccattttcaattgtccatctacatccatat 56063023  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    ||||||| ||||||| |||||||||||||||  ||| ||||||||||||    
T  56063022 aaaagtaactgacgcgaattccaaatactccttcaagcaaagctcgggt 56062974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 28538851 - 28538991
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||| |||  ||  | ||||||||||||||||| |||||||||||||||||||||||||||||||| | |||||| |||||||||| |    
T  28538851 ttgtggggattgaatctagcatccacggacacctcgaacccatggatcattcatcacgctgacctgctgcccatttccaactgtccatctacatccatat 28538950  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaa 141  Q
    ||||||| |||| |  ||||||||||||||| |||| ||||    
T  28538951 aaaagtaactgatgtgaattccaaatactccgccaagcaaa 28538991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 28425315 - 28425172
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||||||||| ||||||||||||||||| || |||||||||| | | ||||| ||||||| ||| || ||||| ||||| | || |    
T  28425315 ttgtggggattgaatccagctaccgtgaacacctcgaacccacggatcattcatcaagttaacctgttgcccatctccaatcgtccatctacaactatat 28425216  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagct 144  Q
    ||||||| ||||||| ||||||||||||||| |||| |||||||    
T  28425215 aaaagtaactgacgcgaattccaaatactccgccaagcaaagct 28425172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 51260596 - 51260741
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    ||||||||||||||||||| | || |||  ||||||||||||||| ||||||||||||| || ||||   |||||||| |||||||| |||||||||| |    
T  51260596 ttgtggggattgaatccagtttccatgagtacctcgaacccatggatcattcatcacgccgatctgc---ccatttccaattgtccatctacatccatat 51260692  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    ||||||| || |||| ||||||||||||||| |||| ||||||||||||    
T  51260693 aaaagtaacttacgcgaattccaaatactcctccaagcaaagctcgggt 51260741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 26423229 - 26423369
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||||||||||||||| ||||| |||||||||||||| || || ||||||||||| ||||| || ||||||| ||| || ||||| ||||| |||| |    
T  26423229 ttgtggggattgaatccaactaccgtgaacacctcgaactcacggatcattcatcacactgacatgttgcccatctccaatcgtccatctacaaccatat 26423328  T
Q  101 aaaagtatctgacgcaaattccaaatactccaccaaacaaa 141  Q
    ||||||| ||||||| ||||||||||||||| |||| ||||    
T  26423329 aaaagtaactgacgcgaattccaaatactccgccaaccaaa 26423369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 4 - 149
Target Start/End: Original strand, 11732715 - 11732860
Alignment:
Q  4 tggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaa 103  Q
    ||||||||||||||||| |||| |||||||||||||||||   ||||||||||||| ||| |||||||||||||  ||| ||||||||||||||||||||    
T  11732715 tggggattgaatccagcaacctagaacacctcgaacccattaatcattcatcacgccgacatgctgcccatttctaattatccacctacatccatgtaaa 11732814  T
Q  104 agtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    | || ||||||| |||||||||||||||||||   |||||||||||    
T  11732815 actaactgacgcgaattccaaatactccaccaggaaaagctcgggt 11732860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 19365008 - 19365129
Alignment:
Q  5 ggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaa 104  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| ||||||  |||||| | ||||||||||  ||||| |||||    
T  19365008 ggggattgaatccaactaccttgaacacctcgaaccaatggatcattcatcacactgacatgctgcaaatttccaactgtccacctaattccatataaaa 19365107  T
Q  105 gtatctgacgcaaattccaaat 126  Q
    ||| |  |||| ||||||||||    
T  19365108 gtaaccaacgcgaattccaaat 19365129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 15607068 - 15607127
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgct 60  Q
    |||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||    
T  15607068 ttgtggggattgaatccagctaccatgaacacctcgaacccatggatcattcatcacgct 15607127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 81; Significance: 3e-38; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 149
Target Start/End: Complemental strand, 20204076 - 20203932
Alignment:
Q  5 ggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaa 104  Q
    ||||||| |||||| ||||||| |||||||| ||||||||| ||||||||||||||||  |||||||||||||| | ||||||||||||||| | |||||    
T  20204076 ggggattaaatccaactaccttcaacacctctaacccatggatcattcatcacgctgatttgctgcccatttccaaatgtccacctacatccgtataaaa 20203977  T
Q  105 gtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    ||| ||||||| ||||||||||||||| |||| ||||| ||||||    
T  20203976 gtaactgacgcgaattccaaatactcctccaagcaaagatcgggt 20203932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 31 - 149
Target Start/End: Complemental strand, 8387171 - 8387053
Alignment:
Q  31 acctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgtaaaagtatctgacgcaaattccaaatactc 130  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||| ||||| || |||||||||| ||||||||  |||||| |||||||||||||     
T  8387171 acctcgaacccatggatcattcatcacactgacctgctgcccatttccaattgtgcatctacatccatataaaagtaattgacgcgaattccaaatactt 8387072  T
Q  131 caccaaacaaagctcgggt 149  Q
    | |||| ||||| ||||||    
T  8387071 ctccaagcaaagttcgggt 8387053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 16096459 - 16096328
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcgaacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatccatgt 100  Q
    |||||| |||||||| ||||||||||||||||||||||||||||| || |||||||||||||||||||  |||||||| ||||||||||||||||||| |    
T  16096459 ttgtggagattgaattcagctaccttgaacacctcgaacccatggatctttcatcacgctgacctgctatccatttccaattgtccacctacatccatat 16096360  T
Q  101 aaaagtatctgacgcaaattccaaatactcca 132  Q
    || |||| ||| | | ||||||||||||||||    
T  16096359 aacagtaactggcacgaattccaaatactcca 16096328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 149
Target Start/End: Complemental strand, 3746370 - 3746221
Alignment:
Q  1 ttgtggggattgaatccagctaccttgaacacctcg----aacccatgggtcattcatcacgctgacctgctgcccatttcctattgtccacctacatcc 96  Q
    |||||||||||||||||||||||| || |||||| |    || |||||| ||||||||||||||||| ||    |||| ||| |||||||||||||| |     
T  3746370 ttgtggggattgaatccagctaccgtggacacctagctagaatccatggatcattcatcacgctgacatga---ccatgtccaattgtccacctacaaca 3746274  T
Q  97 atgtaaaagtatctgacgcaaattccaaatactccaccaaacaaagctcgggt 149  Q
    || |||||||| ||||||| ||||||||||||||| |||| ||||||| ||||    
T  3746273 atataaaagtaactgacgcgaattccaaatactccgccaagcaaagctagggt 3746221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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