View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8080_high_2 (Length: 596)
Name: NF8080_high_2
Description: NF8080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8080_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 133 - 590
Target Start/End: Complemental strand, 49699797 - 49699336
Alignment:
| Q |
133 |
catttatatatacagttgccgtaatttttatgaatttaaaatgaactcctaacatttcgtattgcatgtgtgttggttacaaaaatcattgctaaactcg |
232 |
Q |
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| T |
49699797 |
catttatatatacagttgccgtaatttttatgaatttaaaatgaactcctaacatttcgtattgcatgtgtgttggttacaaaaatcattgctaaactcg |
49699698 |
T |
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| Q |
233 |
nnnnnnnttgttttaacattcttgcaatttgact----tccaaaatttaaaattttacacagtatgaacttcccttatatataacctactccaaacattc |
328 |
Q |
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| T |
49699697 |
aaaaaaattgttttaacattcttgcaatttgactaacttccaaaatttaaaattttacacagtatgaacttcccttatatattacctactccaaatattc |
49699598 |
T |
|
| Q |
329 |
cctagaacttctataagaccatgtgcctaatgacaccagcaaggacatgtcccttgatgggatatgttgcaacttacataaaatttacaaacagaaacct |
428 |
Q |
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|||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
49699597 |
cctagaacttctataagatcatgtgcctaatgacaccggcaaggacatgtcccttgatgggatatgttgcaacttacatagaatttacaaacagaaacct |
49699498 |
T |
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| Q |
429 |
accacctaagttcagtcagtagtagtagtgacaagcagtcttcacctttgctgggcagtttagcatcatcaactccaacttttgattttgatggaagtta |
528 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
49699497 |
accacctaagttcagtcagtagtagtagtgataagcagtcttcacctttgctgggcagtttagcgtcatcaactccaacttttgattttgatggaagtta |
49699398 |
T |
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| Q |
529 |
tacactgtaatttcactgcctaccaattttggttggaatgatatcattcatcttcatctcac |
590 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
49699397 |
tacactgtaatttcactgcctaccaattttggttggaatgatatcattcatcttcatgtcac |
49699336 |
T |
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