View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8080_high_4 (Length: 355)
Name: NF8080_high_4
Description: NF8080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8080_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 58 - 336
Target Start/End: Complemental strand, 38391051 - 38390773
Alignment:
| Q |
58 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaatattgttcctgatctttcattgatttgacctacaataccacataataataaca |
157 |
Q |
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| T |
38391051 |
actgtctaggcgttagaatcctataaggtttttcattttccgcccaatattgttcctgatctttcattgatttgacctacaataccacataataataaca |
38390952 |
T |
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| Q |
158 |
aaaaattaatctattaaaactcattatgttctaaccatgcagttatttacacttatttgtagaaaatctgccgctgtgtgcaatgcaatagaagcacatc |
257 |
Q |
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| T |
38390951 |
aaaaattaaactattaaaactcattatgttctaaccatgcagttatttatacttatttgtagaaaatctgccgctgtgtgcaatgcaatagaagcacatc |
38390852 |
T |
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| Q |
258 |
atgctttaaaggaaacatactctctgagggacatattgcatactagggttcatgtgagcatgtgcttgtaggtctgaca |
336 |
Q |
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| T |
38390851 |
atgctttaaaggaaacatactctctgagggacatattgtgtactagggttcatgtgagcatgtgcttgtaggtctgaca |
38390773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 79 - 196
Target Start/End: Original strand, 38390085 - 38390202
Alignment:
| Q |
79 |
tataaggtttttcattttccgcccaatattgttcctgatctttcattgatttgacctacaataccacataataataacaaaaaattaatctattaaaact |
178 |
Q |
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| T |
38390085 |
tataaggtttttcatttaccgctcaatattgctcctgatcttttattaatgtgagttacaataccacatattaataaccaaaaatgaaactattaaaact |
38390184 |
T |
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| Q |
179 |
cattatgttctaaccatg |
196 |
Q |
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| T |
38390185 |
cattatcttctaatcatg |
38390202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 1 - 196
Target Start/End: Complemental strand, 38389756 - 38389549
Alignment:
| Q |
1 |
tagcaagtttattagcaagggttatcccaacttcggtcagctgaaatgcctctgcatactgtctaggcgttagaatcctataaggtttttcattttccgc |
100 |
Q |
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|||||| || |||||||| | |||| ||||| || || |||| ||||||||||||| ||| | |||| || | | |||||||| ||||||||||||||| |
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| T |
38389756 |
tagcaaattcattagcaaagcttattccaacatcagtaagctaaaatgcctctgcaaactctttaggtgtcacatacctataagatttttcattttccgc |
38389657 |
T |
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| Q |
101 |
ccaa----tattgttcctgatctttcattgatttgacc----tacaataccacataa----taataacaaaaaattaatctattaaaactcattatgttc |
188 |
Q |
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|||| |||| |||||||||||||||||| ||||| |||||||||||||| ||||||| ||||||||| ||||||||||||||||| ||| |
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| T |
38389656 |
ccaaaattaattgctcctgatctttcattgatgtgaccaacaaacaataccacataataattaataaccaaaaattaaactattaaaactcattatattc |
38389557 |
T |
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| Q |
189 |
taaccatg |
196 |
Q |
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|||||||| |
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| T |
38389556 |
taaccatg |
38389549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 231 - 295
Target Start/End: Complemental strand, 38390377 - 38390313
Alignment:
| Q |
231 |
ctgtgtgcaatgcaatagaagcacatcatgctttaaaggaaacatactctctgagggacatattg |
295 |
Q |
| |
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||||||||||||| |||||||||||||| | ||||||||| ||||||||| ||||||||||||| |
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| T |
38390377 |
ctgtgtgcaatgcgatagaagcacatcaagatttaaaggacacatactcttcgagggacatattg |
38390313 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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