View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8080_low_2 (Length: 600)
Name: NF8080_low_2
Description: NF8080
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8080_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 268; Significance: 1e-149; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 22 - 293
Target Start/End: Complemental strand, 38385523 - 38385252
Alignment:
| Q |
22 |
ttcgtgtgataatttttaccggaaggtgtcgagaggaaatttccacccttcaattctctcttaacgactttgacggcatgcagtagaaataaataaatga |
121 |
Q |
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| T |
38385523 |
ttcgtgtgataatttttaccggaaggtgtccagaggaaatttccacccttcaattctctcttaacgactttgacggcatgcagtagaaataaataaatga |
38385424 |
T |
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| Q |
122 |
ttgagatttcactgcataaaactttcatatgaaatgatatgttctaggtgttttctgttgggagatattatttttcggataaatttattaaagaataccg |
221 |
Q |
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| T |
38385423 |
ttgagatttcactgcataaaactttcatatgaaatgatatgttctaggtgttttctgttgggagatattatttttcggataaatttattaaagaataccg |
38385324 |
T |
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| Q |
222 |
ataaactttatcccttgttttaattaggattaagtaatcataatctaaagtggcttgttcaagtaataatta |
293 |
Q |
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| T |
38385323 |
ataaactttatcccttgttttaattaggattaagtaatcataatctaaagtggcttgttcaagtaataatta |
38385252 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 357 - 591
Target Start/End: Complemental strand, 38385188 - 38384954
Alignment:
| Q |
357 |
tttcaggtttggggcaactatcaactccatatgctgttgaaaaaggagggtgggcatctaccttattgctagtaggacttggggtaatctgtgcttatac |
456 |
Q |
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| T |
38385188 |
tttcaggtttggggcaactatcaactccatatgctgttgaaaaaggagggtgggcatctaccttattgctagtaggacttggggtaatctgtgcttatac |
38385089 |
T |
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| Q |
457 |
ctcacatatacttggaaaatgtcttgaaaagaatccaaagttaacaagttatgtggatattgggattcaagcatttggatcaaagggaagattcttagtt |
556 |
Q |
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| T |
38385088 |
ctctcatatacttggaaaatgtcttgaaaagaatccaaagttaacaagttatgtggatattgggaatcaagcatttggatcaaagggaagattcttagtt |
38384989 |
T |
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| Q |
557 |
gcaacattcatctacatggaaatcttcatctcact |
591 |
Q |
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| T |
38384988 |
gcaacattcatctacatggaaatcttcatgtcact |
38384954 |
T |
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