View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_high_10 (Length: 307)
Name: NF8081_high_10
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_high_10 |
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Alignment Details
Target: chr2 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 18 - 299
Target Start/End: Complemental strand, 45132249 - 45131968
Alignment:
| Q |
18 |
gaagtcccaaaagccaatacactgctagcagtgacaaagagatcaagattttctagcacgttatatattttgatctcaatgtcattttccttctcacagt |
117 |
Q |
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| T |
45132249 |
gaagtcccaaaagccaatacactgctagcagtgacaaagagatcaagattttctagcacgttatatattttgatctcaatgtcattttccttctcacagt |
45132150 |
T |
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| Q |
118 |
gcatctgaatgagtacctcattttccattattcttgctttaacatcaaagagtggtgatttgcagcaatcctgatcagagtttgaggtggtatcttcact |
217 |
Q |
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| T |
45132149 |
gcatctgaatgagtacctcattttccattattcttgctttaacatcaaagagtggtgatttgcagcaatcctgatcagagtttgaggtggtatcttcact |
45132050 |
T |
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| Q |
218 |
tacacacatatcagttttcttgagaattattgttgattctttgctattcttgttttgatcctctagctccttcacaggttct |
299 |
Q |
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| T |
45132049 |
tacacacatatcagttttcttgagaattattgttgattctttgctattcttgttttgatcctctagctccttcacacgttct |
45131968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 22 - 201
Target Start/End: Complemental strand, 45105958 - 45105779
Alignment:
| Q |
22 |
tcccaaaagccaatacactgctagcagtgacaaagagatcaagattttctagcacgttatatattttgatctcaatgtcattttccttctcacagtgcat |
121 |
Q |
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| T |
45105958 |
tcccaaaaggaaatacactgctggcagtgacaataagatgaagattttcaagcaaattcaatattttgatctcaatgccattttccttctcacaatggat |
45105859 |
T |
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| Q |
122 |
ctgaatgagtacctcattttccattattcttgctttaacatcaaagagtggtgatttgcagcaatcctgatcagagtttg |
201 |
Q |
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| T |
45105858 |
ctcaatgagtacttcattttccaacactcttgctttgacatcaggcagtgatgatttacaacaatcctgatcagaatttg |
45105779 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 1820548 - 1820596
Alignment:
| Q |
22 |
tcccaaaagccaatacactgctagcagtgacaaagagatcaagattttc |
70 |
Q |
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| T |
1820548 |
tcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttc |
1820596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 22 - 70
Target Start/End: Original strand, 1840803 - 1840851
Alignment:
| Q |
22 |
tcccaaaagccaatacactgctagcagtgacaaagagatcaagattttc |
70 |
Q |
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| T |
1840803 |
tcccaaaaggcaagacactgctaccagtgacaaagagttgaagattttc |
1840851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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