View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_high_4 (Length: 486)
Name: NF8081_high_4
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 415; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 415; E-Value: 0
Query Start/End: Original strand, 13 - 467
Target Start/End: Complemental strand, 41861428 - 41860983
Alignment:
| Q |
13 |
agcagagatcccaaaacaaggtgaagaattctatgagccaaaggtataccagcacacattcttctaccagcaccaaatggtataaactcataatgttgtc |
112 |
Q |
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| T |
41861428 |
agcaaagatcccaaaacaaggtgaagaattctatgagccaaaggtataccagcacacattcttctaccagcaccaaatggtataaactcataatgttgtc |
41861329 |
T |
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| Q |
113 |
ctctataatcactcttataactcttattattgatatcacaaaatctctcaggtttgaaaaccaatggttcatcccaaacatcagggtctcttccaattgc |
212 |
Q |
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| T |
41861328 |
ctctataatcactcttat---------tattgatatcacaaaatctctcaggtttgaaaaccaatggttcatcccaaacatcagggtctcttccaattgc |
41861238 |
T |
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| Q |
213 |
ccatgtgttaacaaatacttgtgtgtcttttggtacgaagtatcccatgaattctgtgtcttgtactgcttttcttgggacaagtagtggaattggagga |
312 |
Q |
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| T |
41861237 |
ccatgtgttgacaaatacttgtgtgtcttttggtacgaagtatcccatgaattctgtgtcttgtactgcttttcttgggacaagtagtggaattggagga |
41861138 |
T |
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| Q |
313 |
tgtaaccttagtgtttctttgacaacaccttgtaggtatggaagcttgtctatgtcactctcttcaacatctttggtaccaattactgaactaagctcgg |
412 |
Q |
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| T |
41861137 |
tgtaaccttagtgtttctttgacaacaccttgtaggtatggaagcttgtctatgtcactctcttcaacatctttggtaccaattactgaactaagctcgg |
41861038 |
T |
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| Q |
413 |
ttttgagtttcaacatacaatcacggttgcataacagttctgtcatagcccattc |
467 |
Q |
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| T |
41861037 |
ttttgagtttcaacatacaatcacggttgcataacagttctgtcatagcccattc |
41860983 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 66 - 110
Target Start/End: Complemental strand, 35048232 - 35048188
Alignment:
| Q |
66 |
acacattcttctaccagcaccaaatggtataaactcataatgttg |
110 |
Q |
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| T |
35048232 |
acacattcttctacccgcaccaaatggaatcaactcaaaatgttg |
35048188 |
T |
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