View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_high_5 (Length: 433)
Name: NF8081_high_5
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 1 - 357
Target Start/End: Complemental strand, 13317300 - 13316944
Alignment:
| Q |
1 |
tgtatctatatggttaaataaataaaccagatgagttgaggttaggttatgtacctcaatgttattggcagcaaaatattcttctctgttaaactctgcc |
100 |
Q |
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| T |
13317300 |
tgtatctatatggttaaataaataaaccagatgagttgaggttaggttatgtacctcaatgttattggcagcaaaatattcttctctgttaaactctgcc |
13317201 |
T |
|
| Q |
101 |
atctcctttacctattcaacaaaacaaattgatataccatacacaaatcaaaacattccatttaatgaagattgatcaattaatatataaaatatgtaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13317200 |
atctcctttacctattcaacaaaacaaattgatataccatacacaaatcaaaacattccatttaatgaagattgatcaattaatatataaaatatgtaag |
13317101 |
T |
|
| Q |
201 |
cattaatttgagtgcaaagtgaagactcacccacaaaagcaagatgaaagataaggttatagagaaagagagagcaaagaaatctccaaaatcaaggtaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13317100 |
cattaatttgagtgcaaagtgaagactcacccacaaaagcaagatgaaagataaggttatagagaaagagagagcaaagaaatctccaaaatcaaggtaa |
13317001 |
T |
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| Q |
301 |
gagaagttgctatagtaaatggtgtagaagcatacccaatttttatagcatataagt |
357 |
Q |
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| T |
13317000 |
gagaagttgctatagtaaatggtgtagaagcatacccaatttttatagcatataagt |
13316944 |
T |
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