View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8081_high_8 (Length: 327)

Name: NF8081_high_8
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8081_high_8
NF8081_high_8
[»] chr1 (3 HSPs)
chr1 (1-310)||(17187298-17187621)
chr1 (63-276)||(26656676-26656889)
chr1 (169-276)||(1695991-1696097)
[»] chr8 (3 HSPs)
chr8 (73-273)||(12795439-12795641)
chr8 (152-276)||(11766831-11766957)
chr8 (97-215)||(8165621-8165743)
[»] chr4 (3 HSPs)
chr4 (73-263)||(18949752-18949945)
chr4 (145-183)||(17743131-17743169)
chr4 (169-267)||(24717289-24717384)
[»] chr2 (1 HSPs)
chr2 (145-273)||(24726986-24727113)
[»] chr3 (1 HSPs)
chr3 (120-263)||(20609391-20609534)
[»] chr5 (1 HSPs)
chr5 (173-265)||(19434654-19434746)
[»] chr6 (1 HSPs)
chr6 (178-267)||(28557057-28557146)


Alignment Details
Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 310
Target Start/End: Original strand, 17187298 - 17187621
Alignment:
Q  1 aaagacaagaaagggggagtttaaattgtgtttgaagttttgtgaaatctttcaaagaaaagataacaacataaagtaaggagataatggaaagagacaa 100  Q
    |||||||||||||||||||||| |||||||||||||| ||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  17187298 aaagacaagaaagggggagttttaattgtgtttgaagctttttgaaatctttcaaagcaaagataacaacagaaagtaaggagataatggaaagagacaa 17187397  T
Q  101 tacaaagagtttatcttggcaccccacaacccggaattacttccagttccattgcactttcaagagaattttcactataatcaaatcatgattacaacat 200  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||     
T  17187398 tacaaagagtttatcttggcaccccacaacccgaaattacttcaagtcccattgcacttttaagagaattttcactataatcaaatcatgattacaacaa 17187497  T
Q  201 caacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattctcaatccaaaga--------------tacaaaagatagtgt 286  Q
    |||||||||||||| ||||||||||||||||||||| || | |||||||||| ||||||||||||||||||              |||||||||||||||    
T  17187498 caacactaagacaacctttccctacatttccttgcctcaacctagaggactttctattctcaatccaaagatacaacaagttgtttacaaaagatagtgt 17187597  T
Q  287 atacacaaactctaggggtagtaa 310  Q
    ||||||||||||||||||||||||    
T  17187598 atacacaaactctaggggtagtaa 17187621  T

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Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 63 - 276
Target Start/End: Complemental strand, 26656889 - 26656676
Alignment:
Q  63 ataacaacataaagtaaggagataatggaaagagacaatacaaagagtttatcttgg--caccccacaacccggaattacttccagttccattgcacttt 160  Q
    ||||||||  ||| ||| ||||||| | |||||||||| |||||||||||||  |||  || |||||||   ||  ||||||||||| || ||| ||||     
T  26656889 ataacaacggaaaataaagagataaggaaaagagacaacacaaagagtttatactggtccatcccacaatttggggttacttccagtccccttgaacttc 26656790  T
Q  161 caagagaattttca-ctataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattc 259  Q
    |||   | |||||| ||||||||||||  | |||||||||   | |||||||||| ||| ||||| ||||||||||| || | ||||||||| |||||||    
T  26656789 caacgaatttttcaactataatcaaattctaattacaaca---agactaagacaaccttgccctatatttccttgcctcaacctagaggactacctattc 26656693  T
Q  260 tcaatccaaagatacaa 276  Q
    |||||||| ||||||||    
T  26656692 tcaatccagagatacaa 26656676  T

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Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 276
Target Start/End: Original strand, 1695991 - 1696097
Alignment:
Q  169 ttttcactataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattctcaatccaa 268  Q
    ||||||||||||||||||  |||||||||||  | ||||||||||| |||  |||| ||||||||||| || | | |||||||| ||| ||||||||||     
T  1695991 ttttcactataatcaaattttgattacaacaataccactaagacaaccttgtcctagatttccttgcctcaacct-gaggactttctaatctcaatccag 1696089  T
Q  269 agatacaa 276  Q
    ||||||||    
T  1696090 agatacaa 1696097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 61; Significance: 4e-26; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 73 - 273
Target Start/End: Original strand, 12795439 - 12795641
Alignment:
Q  73 aaagtaaggagataatggaaagagacaatacaaagagtttatcttgg--caccccacaacccggaattacttccagttccattgcactttcaagagaatt 170  Q
    ||||||| ||||||| || ||||||||| ||||||| ||||||||||  ||||||| ||||||  ||||||| |||| || ||||||||  || ||||||    
T  12795439 aaagtaaagagataagggtaagagacaacacaaagaatttatcttggttcaccccataacccgagattactttcagtccccttgcacttctaa-agaatt 12795537  T
Q  171 tt-cactataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattctcaatccaaa 269  Q
    || ||| ||||||||| | |||||| |||| |   |||||||||| ||| ||||| ||||||||||| || | |||||||||||||| ||| ||||||||    
T  12795538 tttcacgataatcaaaacctgattataacaactgtactaagacaaccttgccctagatttccttgcctcaacctagaggacttcctaatctaaatccaaa 12795637  T
Q  270 gata 273  Q
    ||||    
T  12795638 gata 12795641  T

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Target: chr8; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 152 - 276
Target Start/End: Original strand, 11766831 - 11766957
Alignment:
Q  152 ttgcactttcaagagaattttc--actataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagagga 249  Q
    |||||||||||||||| |||||  |||||||||||||| |||||||||||  ||||||||||||||||   |||| ||||||||||| || | || | ||    
T  11766831 ttgcactttcaagagatttttctcactataatcaaatcctgattacaacaataacactaagacaatctcgtcctagatttccttgcctcaacctaaaaga 11766930  T
Q  250 cttcctattctcaatccaaagatacaa 276  Q
    |||||||||||||||||| ||||||||    
T  11766931 cttcctattctcaatccagagatacaa 11766957  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 97 - 215
Target Start/End: Original strand, 8165621 - 8165743
Alignment:
Q  97 acaatacaaagagtttatcttgg--caccccacaacccggaattacttccagttc-cattgcactttcaagagaattttcactataatcaaatcatgatt 193  Q
    |||| ||||| ||||||||||||  |||| |||||||||  ||||||||| |  | | |||||||| ||||  | ||||||||||||| ||||| |||||    
T  8165621 acaacacaaatagtttatcttggttcacctcacaacccgagattacttccggccctccttgcacttccaaggtatttttcactataattaaatcctgatt 8165720  T
Q  194 acaac-atcaacactaagacaat 215  Q
    ||||| ||||| |||||||||||    
T  8165721 acaacaatcaatactaagacaat 8165743  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 73 - 263
Target Start/End: Original strand, 18949752 - 18949945
Alignment:
Q  73 aaagtaaggagataatggaaagagacaatacaaagagtttatcttgg--caccccacaacccggaattacttccagttccattgcactttcaagagaa-- 168  Q
    ||||||| || |||| |||||| ||||| |||| || ||||||||||  ||||||| ||||||  ||||||||||||||| ||||||||||||  |||      
T  18949752 aaagtaaagatataagggaaagtgacaacacaa-gaatttatcttggttcaccccataacccgagattacttccagttcctttgcactttcaa-tgaatt 18949849  T
Q  169 -ttttcactataatcaaatcatgattacaacatcaacactaagacaatctt-tccctacatttccttgccccagcatagaggacttcctattctcaa 263  Q
     ||||||||||||| ||||| |||||||||||  | |||||||  |  ||| ||| || ||||||||||| || | |||||||||||||| ||||||    
T  18949850 tttttcactataattaaatcttgattacaacaataccactaaggtagccttgtccata-atttccttgcctcaacctagaggacttcctaatctcaa 18949945  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 145 - 183
Target Start/End: Original strand, 17743131 - 17743169
Alignment:
Q  145 agttccattgcactttcaagagaattttcactataatca 183  Q
    ||||||||||||||||||| ||| |||||||||||||||    
T  17743131 agttccattgcactttcaacagatttttcactataatca 17743169  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 169 - 267
Target Start/End: Complemental strand, 24717384 - 24717289
Alignment:
Q  169 ttttcactataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattctcaatcca 267  Q
    ||||||||||||||||||| |||||||||||  |   ||||||||||||   |||| |||||||| |  || | |||||| ||||||| ||||||||||    
T  24717384 ttttcactataatcaaatcctgattacaacagta---ctaagacaatctagtcctagatttccttacttcaacctagagggcttcctaatctcaatcca 24717289  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 145 - 273
Target Start/End: Original strand, 24726986 - 24727113
Alignment:
Q  145 agttccattgcactttcaagagaattttc-actataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcat 243  Q
    |||||| |||||||| ||||| | ||||| | ||||||||||||||||  |||||| ||| ||||||||| ||||  | || ||||||||||| || | |    
T  24726986 agttcccttgcacttccaagaaatttttccattataatcaaatcatga--acaacaacaatactaagacattcttgtcttagatttccttgcctcaacct 24727083  T
Q  244 agaggacttcctattctcaatccaaagata 273  Q
    ||||||||||||| | |||| |||||||||    
T  24727084 agaggacttcctaatatcaaaccaaagata 24727113  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 120 - 263
Target Start/End: Complemental strand, 20609534 - 20609391
Alignment:
Q  120 caccccacaacccggaattacttccagttccattgcactttcaagagaattttcactataatcaaatcatgattacaacatcaacactaagacaatcttt 219  Q
    ||||| ||||||||  |||||||||   ||| || |||||| ||| || ||| ||||||||||||||| |||||||||||  | |||||||||||| ||     
T  20609534 caccctacaacccgagattacttccgactcccttacacttttaagggattttacactataatcaaatcgtgattacaacaaaaccactaagacaatattg 20609435  T
Q  220 ccctacatttccttgccccagcatagaggacttcctattctcaa 263  Q
     || | ||||||||| | || | ||||| |||||||| ||||||    
T  20609434 tcccaaatttccttgtctcaacttagagaacttcctaatctcaa 20609391  T

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Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 173 - 265
Target Start/End: Complemental strand, 19434746 - 19434654
Alignment:
Q  173 cactataatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattctcaatc 265  Q
    ||||||||||||||  ||||||||| | ||| |||||||||||||   |||| |||||||| ||  | | |||||||||||||| ||||||||    
T  19434746 cactataatcaaattttgattacaataacaatactaagacaatctaatcctagatttccttacctaaacctagaggacttcctaatctcaatc 19434654  T

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Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 267
Target Start/End: Complemental strand, 28557146 - 28557057
Alignment:
Q  178 taatcaaatcatgattacaacatcaacactaagacaatctttccctacatttccttgccccagcatagaggacttcctattctcaatcca 267  Q
    ||||||||||||||||||| || |   ||||||| || ||| ||||| ||||| ||||| ||   |||||||||||||| ||||||||||    
T  28557146 taatcaaatcatgattacaccaactgtactaagataaccttgccctagatttcattgcctcaatctagaggacttcctaatctcaatcca 28557057  T

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