View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_14 (Length: 316)
Name: NF8081_low_14
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 293
Target Start/End: Complemental strand, 40956138 - 40955862
Alignment:
| Q |
13 |
tattattctaatatgttatctcttgcatgtgtgttggtgtatttggtaggtggggatggacaatgcacaagttgaataaaaagtgggtttgttgaaaatt |
112 |
Q |
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| T |
40956138 |
tattattctaatatgttatctcttgcatgtgtgttggtgtgtttggtaggtggggatggacaatgcacaagttgaataaaaagtgggtttgttgaaaatt |
40956039 |
T |
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| Q |
113 |
aattatggccgtttgattatacttattattgagcgtttatgattttgcagcttggcaccataggattgtgtcttgcttggttggtagatgcatgtgtgga |
212 |
Q |
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| T |
40956038 |
aattatggccgtttgattatacttattattgagcgtttatgattttgcagcttggcaccataggattgtgtcttgcttggttggtagatgcatgtgtgga |
40955939 |
T |
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| Q |
213 |
tagaattggactaaaactaagattagttagttggtgagaaatatagtggaagcagcagctagcaaccatgcatgaccatga |
293 |
Q |
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| T |
40955938 |
tggaattggactaaaactaagattagttagttggtgagaaatatagtggaagcagc----agcaaccatgcatgaccatga |
40955862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 90 - 170
Target Start/End: Complemental strand, 40942737 - 40942656
Alignment:
| Q |
90 |
aaaaagtgggtttgttgaaaattaattatggccgtttgattat-acttattattgagcgtttatgattttgcagcttggcac |
170 |
Q |
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| T |
40942737 |
aaaaagtgggtttgttgaaaattaattatggccgtttgattatctcttactattgaacggttatgatcttgcaacgtggcac |
40942656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 98 - 161
Target Start/End: Complemental strand, 40969830 - 40969766
Alignment:
| Q |
98 |
ggtttgttgaaaattaattatggccgtttgattat-acttattattgagcgtttatgattttgca |
161 |
Q |
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| T |
40969830 |
ggtttgttgaaaattaattatgagcgtttgattatcacttaccattgaccggttatgatattgca |
40969766 |
T |
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