View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_2 (Length: 547)
Name: NF8081_low_2
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 493; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 493; E-Value: 0
Query Start/End: Original strand, 20 - 528
Target Start/End: Original strand, 4592760 - 4593268
Alignment:
| Q |
20 |
atcagaaagcttgataatccctaatacaatgaaaagattacataactaaacatggcatctcaaaatctcaccagatttaattaaacatataccatatgat |
119 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592760 |
atcagaaagcttgataatccctaatacaatgaaaagattacataactaaacatagcatctcaaaatctcaccagatttaattaaacatataccatatgat |
4592859 |
T |
|
| Q |
120 |
ttatgccaaatctaccatcaaatataattgatattcaaaccaatactcacccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatga |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592860 |
ttatgccaaatctaccatcaaatataattgatattcaaagcaatacttacccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatga |
4592959 |
T |
|
| Q |
220 |
cactgtcaacatttttcctaaaaaattataaaacacatgagtcaataagtagcaactaataactaattgtctacaaagtgaaagaaaaagttgttgagtt |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4592960 |
cactgtcaacatttttcctaaaaaattataaaacacatgagtcaataagtagcaactaataactaattgtctacaaagtgaaagaaaaagttgttgagtt |
4593059 |
T |
|
| Q |
320 |
taagagtacttcaatcttgaagaccacacagccacttcaaatctctcaaagcagaagttcagaaactcgtaataaaaaggcctctcgaatactgatgaaa |
419 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4593060 |
taacagtacttcaatcttgaagaccacacagccacttcaaatctctcaaagcagaagttcagaaactcgtaataaaaaggcctctcgaatactgatgaaa |
4593159 |
T |
|
| Q |
420 |
caaaaagctcaatcaaatcattagaaaatagattgatccataaatccaattcttatacgcagtcaatgagtaaggaaattttatgccttcaatcaattgc |
519 |
Q |
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| T |
4593160 |
caaaaagctcaatcaaatcattagaaaatagattgatccataaatccaattcttatacgcagtcaatgagtaaggaaattttatgccttcaatcaattgc |
4593259 |
T |
|
| Q |
520 |
actcgtcaa |
528 |
Q |
| |
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||||||||| |
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| T |
4593260 |
actcgtcaa |
4593268 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 106; E-Value: 9e-53
Query Start/End: Original strand, 326 - 499
Target Start/End: Original strand, 4585390 - 4585562
Alignment:
| Q |
326 |
tacttcaatcttgaagaccacacagccacttcaaatctctcaaagcagaagttcagaaactcgtaataaaaaggcctctcgaatactgatgaaacaaaaa |
425 |
Q |
| |
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||||||| ||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |||| | || |
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| T |
4585390 |
tacttcattcttgaagaccacacagccacatcgaatctctcaaagcagaagttcagaaactcttgataaaaaggcctctcgaatactgaggaaa-acgaa |
4585488 |
T |
|
| Q |
426 |
gctcaatcaaatcattagaaaatagattgatccataaatccaattcttatacgcagtcaatgagtaaggaaatt |
499 |
Q |
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| T |
4585489 |
gcacaaaccaatcattagaaaatagattgatccataaatccaattcatatacaaagtcaatgagtaagaaaatt |
4585562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 96; E-Value: 8e-47
Query Start/End: Original strand, 163 - 316
Target Start/End: Original strand, 4585190 - 4585349
Alignment:
| Q |
163 |
tactcacccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatgacactgtcaacatttttcctaaaaaattataaaacacatgagtc |
262 |
Q |
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|||| ||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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| T |
4585190 |
tacttacccaacagaacaccaacctttgtttcatgtctcccattaaataatcaatgacactgtcaacatttttcctataaagttataaaacacatgagtc |
4585289 |
T |
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| Q |
263 |
aataag---tagca---actaataactaattgtctacaaagtgaaagaaaaagttgttga |
316 |
Q |
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|||||| ||||| |||||||| ||||||| ||||||||||||||||||| |||||| |
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| T |
4585290 |
aataagtactagcaactactaataattaattgtatacaaagtgaaagaaaaagctgttga |
4585349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 168 - 414
Target Start/End: Original strand, 4601264 - 4601520
Alignment:
| Q |
168 |
acccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatgacactgtcaacatttttcctaaaaaattataaaacacatgagtcaata- |
266 |
Q |
| |
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|||||||||||||||| ||| || ||||||||||||||||||||||| | ||| |||||||||||||| ||| |||||||| ||| | |||||||||| |
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| T |
4601264 |
acccaacagaaaatcagcctatgcttcatgtctcccatcaaataatcgacgactctgtcaacattttttctacaaaattatgaaaaa--tgagtcaatat |
4601361 |
T |
|
| Q |
267 |
agtagcaactaataactaattgtctacaaagtgaaag--------aaaaagttgttgagtttaagagta---cttcaatcttgaagaccacacagccact |
355 |
Q |
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| |||||| | ||| ||||| | |||| |||||| | | | | || |||||||||||| ||||| ||||||||||||||||||||| |
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| T |
4601362 |
acaagcaacaactaattaattaaatgcaaattgaaagttcatagaacacaatgattaagtttaagagtaatacttcattcttgaagaccacacagccaca |
4601461 |
T |
|
| Q |
356 |
tcaaatctctcaaagcagaagttcagaaactcgtaataaaaaggcctctcgaatactga |
414 |
Q |
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||||||||||||||||||||||||||||| || | |||||| ||||||| ||||||||| |
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| T |
4601462 |
tcaaatctctcaaagcagaagttcagaaattcatgataaaatggcctcttgaatactga |
4601520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 163 - 259
Target Start/End: Original strand, 4575204 - 4575299
Alignment:
| Q |
163 |
tactcacccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatgacactgtcaacatttttcctaaaaaattataaaacacatga |
259 |
Q |
| |
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|||| |||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||||||| ||| ||| |||||||||||||||||||| |
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| T |
4575204 |
tacttacccaagtgaaaatcaacatttgtttcatgtctcccatcaaataatcaatgatactgtcaacagtttccct-aaaaattataaaacacatga |
4575299 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 317 - 410
Target Start/End: Original strand, 4575364 - 4575457
Alignment:
| Q |
317 |
gtttaagagtacttcaatcttgaagaccacacagccacttcaaatctctcaaagcagaagttcagaaactcgtaataaaaaggcctctcgaata |
410 |
Q |
| |
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|||||| ||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||| || | | |||||| ||||| ||||| |
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| T |
4575364 |
gtttaaaagtactttgatcgtgaagaccacacagccacttcaaatctctcaaagcagaagttcagaaattcatgagaaaaagacctcttgaata |
4575457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 165 - 273
Target Start/End: Original strand, 4606097 - 4606205
Alignment:
| Q |
165 |
ctcacccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatgacactgtcaacatttttcctaaaaaattataaaacacatgagtcaa |
264 |
Q |
| |
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||||||||||||||||||||||| | ||||| ||| ||||||||||||| || | || || |||||||||||| |||||||||||| || |||| || |
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| T |
4606097 |
ctcacccaacagaaaatcaacctctctttcaagtcacccatcaaataattaagaaaacggttgacatttttcctacaaaattataaaatccaggagttaa |
4606196 |
T |
|
| Q |
265 |
taagtagca |
273 |
Q |
| |
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|||| |||| |
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|
| T |
4606197 |
taagcagca |
4606205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 316 - 387
Target Start/End: Original strand, 4606325 - 4606396
Alignment:
| Q |
316 |
agtttaagagtacttcaatcttgaagaccacacagccacttcaaatctctcaaagcagaagttcagaaactc |
387 |
Q |
| |
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|||| ||||||||| | ||||||||||||||||||||| ||||| |||| ||||| |||||||||||||| |
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| T |
4606325 |
agttgaagagtactctattcttgaagaccacacagccacatcaaaattctcgaagcaaaagttcagaaactc |
4606396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 163 - 248
Target Start/End: Original strand, 42419004 - 42419089
Alignment:
| Q |
163 |
tactcacccaacagaaaatcaacctttgtttcatgtctcccatcaaataatcaatgacactgtcaacatttttcctaaaaaattat |
248 |
Q |
| |
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|||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
42419004 |
tacttacccaacagaaaattgacctttttttcatgtctcccatcaaataatcaatgacacggtcaacatttttcctacaaaattat |
42419089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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