View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_21 (Length: 248)
Name: NF8081_low_21
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 18 - 241
Target Start/End: Complemental strand, 35876811 - 35876588
Alignment:
| Q |
18 |
attattccaagactgtggtagattattcacatgtaatagatctataatgatgaaaatgtgtgcttatgttctccattnnnnnnnngtgtgcgtatgtttg |
117 |
Q |
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| T |
35876811 |
attattccaagactgtggtagattattcacatgtaatagatctataatgatgaaaatgtgtgcttatgttctccatttaaaaaaagtgtgcgtatgtttg |
35876712 |
T |
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| Q |
118 |
cccgtctaagaacttccccccatagggttgcacacgcttattttgagaatgctgtcggctaaaattgacaaagatttgctcatgacacgacacaaattat |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35876711 |
cccgtctaagaacttccccccatagggttgcacacgcttattttgagaatgctttcggctaaaattgacaaagatttgctcatgacacgacacaaattat |
35876612 |
T |
|
| Q |
218 |
gtaccttagttagtattatctacc |
241 |
Q |
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|||||||||||| |||||| |||| |
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| T |
35876611 |
gtaccttagttattattatgtacc |
35876588 |
T |
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