View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8081_low_24 (Length: 237)

Name: NF8081_low_24
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8081_low_24
NF8081_low_24
[»] chr7 (1 HSPs)
chr7 (1-223)||(35050355-35050577)
[»] chr4 (2 HSPs)
chr4 (1-223)||(20006828-20007059)
chr4 (85-216)||(54076826-54076957)
[»] chr1 (5 HSPs)
chr1 (1-223)||(14123307-14123538)
chr1 (85-216)||(41699993-41700124)
chr1 (85-216)||(41705587-41705718)
chr1 (85-223)||(24344280-24344418)
chr1 (112-223)||(40250140-40250251)
[»] chr5 (1 HSPs)
chr5 (97-216)||(23558276-23558395)
[»] chr6 (3 HSPs)
chr6 (85-223)||(24185486-24185624)
chr6 (85-223)||(20787753-20787891)
chr6 (25-85)||(8533075-8533135)
[»] chr2 (2 HSPs)
chr2 (85-223)||(15048304-15048442)
chr2 (85-151)||(38177667-38177733)
[»] chr3 (2 HSPs)
chr3 (30-85)||(26304846-26304901)
chr3 (85-151)||(49961457-49961523)


Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 35050577 - 35050355
Alignment:
Q  1 atcatcttcagtatgtatccccacagaaacaacttcgtaaaaggcatcacatgccttaccaactagttgcaattcaacatttccatcaaacccacattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35050577 atcatcttcagtatgtatccccacagaaacaacttcgtaaaaggcatcacatgccttaccaactagttgcaattcaacatttccatcaaacccacattta 35050478  T
Q  101 ataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagctgaagaacacaaagga 200  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  35050477 ataagtgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacggtactgactcagttttacctgtgagctgaagaacacaaagga 35050378  T
Q  201 tatgtctgcataaaatgccttta 223  Q
    |||||||||||||||||||||||    
T  35050377 tatgtctgcataaaatgccttta 35050355  T

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Target: chr4 (Bit Score: 164; Significance: 9e-88; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 20006828 - 20007059
Alignment:
Q  1 atcatcttcagtatgtatccccacagaaacaacttcgtaaaaggcatcacatgccttaccaactagttgcaattcaacatttcc---------atcaaac 91  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         |||||||    
T  20006828 atcatcttcagtatgtatccccatagaaacaacttcgtaaaaggcatcacatgctttaccaactagttgcaattcaacatttccggctaaatgatcaaac 20006927  T
Q  92 ccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagctgaagaa 191  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  20006928 ccacatttaataagtgtgtgtctccacttaatatcattcctccaccttgacaaaatataacaagacgacactgactcagttttacctgtgagctgaagaa 20007027  T
Q  192 cacaaaggatatgtctgcataaaatgccttta 223  Q
    |||||||||| |||||||||||||||||||||    
T  20007028 cacaaaggatgtgtctgcataaaatgccttta 20007059  T

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Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 216
Target Start/End: Original strand, 54076826 - 54076957
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| |||| ||||||||| |||| ||| |||||||||||||||||||| || | ||| |||||||||||  | |||||||| |||||| ||||||||    
T  54076826 atcaaaaccacttttaataagtgtgtatcttcgcttaatatccttcctccatctcggcaatatataacaagagggcactgactctgttttagctgtgagc 54076925  T
Q  185 tgaagaacacaaaggatatgtctgcataaaat 216  Q
    | ||||||||||||||||||||| ||||||||    
T  54076926 ttaagaacacaaaggatatgtctacataaaat 54076957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 164; Significance: 9e-88; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 14123538 - 14123307
Alignment:
Q  1 atcatcttcagtatgtatccccacagaaacaacttcgtaaaaggcatcacatgccttaccaactagttgcaattcaacatttcc---------atcaaac 91  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||         |||||||    
T  14123538 atcatcttcagtatgtatccccatagaaacaacttcgtaaaaggcatcacatgctttaccaactagttgcaattcaacatttccggctaaatgatcaaac 14123439  T
Q  92 ccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagctgaagaa 191  Q
    |||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  14123438 ccacatttaataagtgtgtgtctccacttaatatcattcctccaccttgacaaaatataacaagacgacactgactcagttttacctgtgagctgaagaa 14123339  T
Q  192 cacaaaggatatgtctgcataaaatgccttta 223  Q
    |||||||||| |||||||||||||||||||||    
T  14123338 cacaaaggatgtgtctgcataaaatgccttta 14123307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 41700124 - 41699993
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| |||| ||||||||| |||| ||| |||||||||||||||||||| || | ||| |||||||||||  | |||||||| |||||| ||||||||    
T  41700124 atcaaaaccacttttaataagtgtgtatcttcgcttaatatccttcctccatctcggcaatatataacaagagggcactgactctgttttagctgtgagc 41700025  T
Q  185 tgaagaacacaaaggatatgtctgcataaaat 216  Q
    | ||||||||||||||||||||| ||||||||    
T  41700024 ttaagaacacaaaggatatgtctacataaaat 41699993  T

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Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 85 - 216
Target Start/End: Complemental strand, 41705718 - 41705587
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| |||| ||||||||| |||| ||| |||||||||||||||||||| || | ||| |||||||||||  | |||||||| |||||| ||||||||    
T  41705718 atcaaaaccacttttaataagtgtgtatcttcgcttaatatccttcctccatctcggcaatatataacaagagggcactgactctgttttagctgtgagc 41705619  T
Q  185 tgaagaacacaaaggatatgtctgcataaaat 216  Q
    | ||||||||||||||||||||| ||||||||    
T  41705618 ttaagaacacaaaggatatgtctacataaaat 41705587  T

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Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 223
Target Start/End: Complemental strand, 24344418 - 24344280
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| |||||||||||||| || |  |||||||| ||||| |||||||||| || ||||||||||  |||  | ||  | || ||||| ||| |||||    
T  24344418 atcaaaaccacatttaataagtgtatacctccgctttatatctttcctccaccgtgccaaaatataattagatggcacgaaatctgttttccctatgagc 24344319  T
Q  185 tgaagaacacaaaggatatgtctgcataaaatgccttta 223  Q
    | ||| ||||||||||| || || |||||||||||||||    
T  24344318 ttaagcacacaaaggatgtgcctacataaaatgccttta 24344280  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 112 - 223
Target Start/End: Complemental strand, 40250251 - 40250140
Alignment:
Q  112 tctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagctgaagaacacaaaggatatgtctgcat 211  Q
    ||||||||| | || ||||||||||| || |||||||||| ||||  | | ||| || ||||| ||  |||||| ||| |||||||| || |||||||||    
T  40250251 tctccgctttacatacttcctccaccgtggcaaaatataaaaagagggcattgaatctgttttgccaatgagcttaagcacacaaagaatgtgtctgcat 40250152  T
Q  212 aaaatgccttta 223  Q
    ||||| ||||||    
T  40250151 aaaattccttta 40250140  T

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Target: chr5 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 97 - 216
Target Start/End: Complemental strand, 23558395 - 23558276
Alignment:
Q  97 tttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagctgaagaacacaa 196  Q
    ||||||||| || | ||| |||||||||||||||||||| || | ||| |||||||||||  | |||||||| |||||| ||||||||| ||||||||||    
T  23558395 tttaataagtgtatatcttcgcttaatatccttcctccatctcggcaatatataacaagagggcactgactctgttttagctgtgagcttaagaacacaa 23558296  T
Q  197 aggatatgtctgcataaaat 216  Q
    ||||||||||| ||||||||    
T  23558295 aggatatgtctacataaaat 23558276  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 24185486 - 24185624
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| |||||||||||||| || |  |||||||| ||||| |||||||||| || ||||||||||  |||  | ||  | || ||||| ||| |||||    
T  24185486 atcaaaaccacatttaataagtgtatacctccgctttatatctttcctccaccgtgccaaaatataattagatggcacgaaatctgttttccctatgagc 24185585  T
Q  185 tgaagaacacaaaggatatgtctgcataaaatgccttta 223  Q
    | ||| ||||||||||| || || |||||||||||||||    
T  24185586 ttaagcacacaaaggatgtgcctacataaaatgccttta 24185624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 20787753 - 20787891
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| || ||||||||||| || |  |||||||| |||||||||||||||| || ||||||||||  |||  | ||  | || ||||| ||| |||||    
T  20787753 atcaaaaccgcatttaataagtgtatacctccgctttatatccttcctccaccgtgccaaaatataattagatggcacaaaatctgttttccctatgagc 20787852  T
Q  185 tgaagaacacaaaggatatgtctgcataaaatgccttta 223  Q
    | ||| || |||||||| || || |||||||||||||||    
T  20787853 ttaagcacgcaaaggatgtgcctacataaaatgccttta 20787891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 85
Target Start/End: Original strand, 8533075 - 8533135
Alignment:
Q  25 agaaacaacttcgtaaaaggcatcacatgccttaccaactagttgcaattcaacatttcca 85  Q
    |||| ||||||| ||||||||||||||||| ||||||||  | || || ||||||||||||    
T  8533075 agaagcaacttcataaaaggcatcacatgctttaccaacacgctgtaactcaacatttcca 8533135  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 85 - 223
Target Start/End: Original strand, 15048304 - 15048442
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataacaagacagtactgactcagttttacctgtgagc 184  Q
    |||||| |||||||||||||| || |  |||||||| |||||||||||||||| || ||||||||||  |||  | ||  | || ||||| ||| |||||    
T  15048304 atcaaaaccacatttaataagtgtatacctccgctttatatccttcctccaccgtgccaaaatataattagatggcacgaaatctgttttccctatgagc 15048403  T
Q  185 tgaagaacacaaaggatatgtctgcataaaatgccttta 223  Q
    | ||| || |||||||| || || |||||||||||||||    
T  15048404 ttaagcacgcaaaggatgtgcctacataaaatgccttta 15048442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 38177733 - 38177667
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataa 151  Q
    |||||| |||||||||||||| || |  ||||| || |||||||||||||||| || ||||||||||    
T  38177733 atcaaaaccacatttaataagtgtatacctccgttttatatccttcctccaccgtgccaaaatataa 38177667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 30 - 85
Target Start/End: Complemental strand, 26304901 - 26304846
Alignment:
Q  30 caacttcgtaaaaggcatcacatgccttaccaactagttgcaattcaacatttcca 85  Q
    ||||||||||||||||||||||||| ||||||||  |||| || ||||||||||||    
T  26304901 caacttcgtaaaaggcatcacatgctttaccaacacgttgtaactcaacatttcca 26304846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 85 - 151
Target Start/End: Complemental strand, 49961523 - 49961457
Alignment:
Q  85 atcaaacccacatttaataagcgtgtgtctccgcttaatatccttcctccaccttgacaaaatataa 151  Q
    |||||| |||||||||||||| || |  |||| ||| |||||||||||||||| || ||||||||||    
T  49961523 atcaaaaccacatttaataagtgtatacctccactttatatccttcctccaccgtgccaaaatataa 49961457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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