View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8081_low_27 (Length: 204)

Name: NF8081_low_27
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8081_low_27
NF8081_low_27
[»] chr8 (28 HSPs)
chr8 (18-186)||(19287248-19287416)
chr8 (12-154)||(19468973-19469112)
chr8 (41-186)||(19173247-19173392)
chr8 (41-186)||(19344706-19344851)
chr8 (12-141)||(19555894-19556020)
chr8 (12-154)||(19469909-19470051)
chr8 (12-154)||(19540833-19540975)
chr8 (12-154)||(19591723-19591865)
chr8 (12-162)||(19410368-19410515)
chr8 (12-162)||(19457387-19457534)
chr8 (12-162)||(19523544-19523691)
chr8 (12-139)||(19376201-19376325)
chr8 (46-141)||(19458247-19458342)
chr8 (12-141)||(19468145-19468270)
chr8 (12-134)||(19448103-19448222)
chr8 (12-134)||(19532854-19532973)
chr8 (24-143)||(19355050-19355169)
chr8 (12-160)||(19404311-19404456)
chr8 (18-143)||(19504472-19504600)
chr8 (24-143)||(19337030-19337149)
chr8 (12-105)||(19390209-19390299)
chr8 (54-104)||(19185066-19185116)
chr8 (41-140)||(19489684-19489783)
chr8 (54-104)||(16004292-16004342)
chr8 (54-103)||(15984425-15984474)
chr8 (41-103)||(15952771-15952832)
chr8 (54-103)||(15977628-15977677)
chr8 (54-103)||(19151225-19151274)
[»] chr1 (1 HSPs)
chr1 (41-102)||(36315086-36315147)


Alignment Details
Target: chr8 (Bit Score: 165; Significance: 2e-88; HSPs: 28)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 18 - 186
Target Start/End: Complemental strand, 19287416 - 19287248
Alignment:
Q  18 gaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaat 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19287416 gaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgcggaatttaagtcaatggaat 19287317  T
Q  118 gatttctatcatgcatccacactactttaccataatccgcattaagaccaatgaacaagtgagcatctt 186  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19287316 gatttctatcatgcatccacactactttaccataatccgcattaagaccaatgaacaagtgagcatctt 19287248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 19468973 - 19469112
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19468973 tgaggtgaagagtaaatgattattggt---ttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 19469069  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatc 154  Q
    ||||||||||| |||||| ||||||||||||| | ||||||||    
T  19469070 tggaatgatttatatcatacatccacactactgtgccataatc 19469112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 41 - 186
Target Start/End: Original strand, 19173247 - 19173392
Alignment:
Q  41 tttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttctatcatgcatccacact 140  Q
    |||||||||||| |||| |||||||||||||||||| || |||| ||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19173247 tttcctattttgtgattgtattttgagcacaccagaataatctagtgaaagaactgctgaatttaagtcaatggaatgatttctatcatacatccacact 19173346  T
Q  141 actttaccataatccgcattaagaccaatgaacaagtgagcatctt 186  Q
    |||   |||||||| ||||||| |||||||| ||||||||||||||    
T  19173347 actgcgccataatcggcattaataccaatgaccaagtgagcatctt 19173392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 94; E-Value: 4e-46
Query Start/End: Original strand, 41 - 186
Target Start/End: Complemental strand, 19344851 - 19344706
Alignment:
Q  41 tttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttctatcatgcatccacact 140  Q
    |||||||||||  ||||||||||||||||||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  19344851 tttcctattttatgattctattttgagcacaccagaataatctagtgatagaactgctgaatttaagtcaatggaatgatttctatcatacatccacact 19344752  T
Q  141 actttaccataatccgcattaagaccaatgaacaagtgagcatctt 186  Q
    |||   ||||| || ||||||| |||||||| ||||||||||||||    
T  19344751 actgcgccatactcggcattaacaccaatgaccaagtgagcatctt 19344706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 19555894 - 19556020
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19555894 tgaggtgaagagtaaatgattattggt---ttcctattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 19555990  T
Q  112 tggaatgatttctatcatgcatccacacta 141  Q
    ||||||||||| |||||| |||||||||||    
T  19555991 tggaatgatttatatcatacatccacacta 19556020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 19469909 - 19470051
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||| |||||||    
T  19469909 tgaggtgaagagtaaatgattattggtaatttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactgatgtattaaagtcaa 19470008  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatc 154  Q
    ||||||||||| |||||| ||||||||||||| | ||||||||    
T  19470009 tggaatgatttatatcatacatccacactactgtgccataatc 19470051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 154
Target Start/End: Original strand, 19540833 - 19540975
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||| |||||||    
T  19540833 tgaggtgaagagtaaatgattattggtaatttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactgatgtattaaagtcaa 19540932  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatc 154  Q
    ||||||||||| |||||| ||||||||||||| | ||||||||    
T  19540933 tggaatgatttatatcatacatccacactactgtgccataatc 19540975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 154
Target Start/End: Complemental strand, 19591865 - 19591723
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||| || ||| |||||||    
T  19591865 tgaggtgaagagtaaatgattattggtaatttcctattttgagattctattttgagcacaccagagtagtctagtaataaaactgatgtattaaagtcaa 19591766  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatc 154  Q
    ||||||||||| |||||| ||||||||||||| | ||||||||    
T  19591765 tggaatgatttatatcatacatccacactactgtgccataatc 19591723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 19410515 - 19410368
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||    
T  19410515 tgaggtgaagagtaaatgattattggt---ttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactgatgtattaaagtcaa 19410419  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatccgcattaa 162  Q
    ||||||||||| |||||| || |||||||||||| |||||||| |||||||    
T  19410418 tggaatgatttatatcatacacccacactactttgccataatcagcattaa 19410368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 12 - 162
Target Start/End: Complemental strand, 19457534 - 19457387
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||    
T  19457534 tgaggtgaagagtaaatgattattggt---ttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactgatgtattaaagtcaa 19457438  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatccgcattaa 162  Q
    ||||||||||| |||||| || |||||||||||| |||||||| |||||||    
T  19457437 tggaatgatttatatcatacacccacactactttgccataatcagcattaa 19457387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 12 - 162
Target Start/End: Original strand, 19523544 - 19523691
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||| |||||||    
T  19523544 tgaggtgaagagtaaatgattattggt---ttcctattttgagattctattttgagcacaccagagtagtctagtgatagaactgatgtattaaagtcaa 19523640  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatccgcattaa 162  Q
    ||||||||||| |||||| || |||||||||||| |||||||| |||||||    
T  19523641 tggaatgatttatatcatacacccacactactttgccataatcagcattaa 19523691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 12 - 139
Target Start/End: Complemental strand, 19376325 - 19376201
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||    
T  19376325 tgaggtgaagagtaaatgattattggt---ttcctattttgtgattctattttgagcacaccagagtagtctagtgatagaactgctgaatctaagtcaa 19376229  T
Q  112 tggaatgatttctatcatgcatccacac 139  Q
    |||||||||||||||||| |||||||||    
T  19376228 tggaatgatttctatcatacatccacac 19376201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 46 - 141
Target Start/End: Original strand, 19458247 - 19458342
Alignment:
Q  46 tattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttctatcatgcatccacacta 141  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||    
T  19458247 tattttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttatatcatacatccacacta 19458342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 84; E-Value: 4e-40
Query Start/End: Original strand, 12 - 141
Target Start/End: Original strand, 19468145 - 19468270
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   |||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19468145 tgaggtgaagagtaaatgattattggt---ttcc-attttgtgattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 19468240  T
Q  112 tggaatgatttctatcatgcatccacacta 141  Q
    ||||||||||| |||||| |||||||||||    
T  19468241 tggaatgatttatatcatacatccacacta 19468270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 134
Target Start/End: Complemental strand, 19448222 - 19448103
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  19448222 tgaggtgaagagtaaatgattattggt---ttcctattttgtgattctattttgagcacaccagaataatctagtgatagaactgctgaatttaagtcaa 19448126  T
Q  112 tggaatgatttctatcatgcatc 134  Q
    |||||||||||||||||||||||    
T  19448125 tggaatgatttctatcatgcatc 19448103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 12 - 134
Target Start/End: Original strand, 19532854 - 19532973
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| ||||||||||||||| || |||   ||||||||||| ||||||||||||||||||||||| || |||| ||||||||||||||||||||||||||    
T  19532854 tgaggtgaagagtaaatgattattggt---ttcctattttgtgattctattttgagcacaccagaataatctagtgatagaactgctgaatttaagtcaa 19532950  T
Q  112 tggaatgatttctatcatgcatc 134  Q
    |||||||||||||||||||||||    
T  19532951 tggaatgatttctatcatgcatc 19532973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 19355169 - 19355050
Alignment:
Q  24 taaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttc 123  Q
    ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||| || ||| ||||  |||||||    
T  19355169 taaatgataatcggtacattcctattttgaaattctattttgagcacaccagagtagtctagtgatagaactgctgaatatatgtctatgggttgatttc 19355070  T
Q  124 tatcatgcatccacactact 143  Q
    |||||| |||||||||||||    
T  19355069 tatcatacatccacactact 19355050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 12 - 160
Target Start/End: Complemental strand, 19404456 - 19404311
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaa 111  Q
    |||| |||||| ||||||||||| |||   |||||| |||| |||||||||||||||||||| ||||||||||  |||||||||||||||| ||||||||    
T  19404456 tgaggtgaagaataaatgataattggt---ttcctactttgtgattctattttgagcacaccggagtagtctagcgatagaactgctgaatctaagtcaa 19404360  T
Q  112 tggaatgatttctatcatgcatccacactactttaccataatccgcatt 160  Q
    |||||||||||||||||| |||||| ||||||   ||||||||| ||||    
T  19404359 tggaatgatttctatcatacatccatactactgcgccataatcctcatt 19404311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 18 - 143
Target Start/End: Original strand, 19504472 - 19504600
Alignment:
Q  18 gaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgat---agaactgctgaatttaagtcaatgg 114  Q
    |||||||||||||| || ||||| |||||||||||| |||||||||||||||||||||||||||||||||||   ||||||| ||||| || ||| ||||    
T  19504472 gaagagtaaatgattattggtaaattcctattttgaaattctattttgagcacaccagagtagtctaatgatagaagaactgatgaatctatgtctatgg 19504571  T
Q  115 aatgatttctatcatgcatccacactact 143  Q
      ||||||||||||| |||||||||||||    
T  19504572 gttgatttctatcatacatccacactact 19504600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 64; E-Value: 3e-28
Query Start/End: Original strand, 24 - 143
Target Start/End: Complemental strand, 19337149 - 19337030
Alignment:
Q  24 taaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttc 123  Q
    ||||||||||| ||||  |||||||||||| ||||||||||||| |||||||||||||||| ||||||||||||||||| || | | ||||  |||||||    
T  19337149 taaatgataattggtacattcctattttgaaattctattttgagtacaccagagtagtctagtgatagaactgctgaatctatggctatgggttgatttc 19337050  T
Q  124 tatcatgcatccacactact 143  Q
    |||| | |||||||||||||    
T  19337049 tatcgtacatccacactact 19337030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 12 - 105
Target Start/End: Complemental strand, 19390299 - 19390209
Alignment:
Q  12 tgagatgaagagtaaatgataatcggtaatttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaattta 105  Q
    |||| ||||||||||||||| || |||   |||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| ||||    
T  19390299 tgaggtgaagagtaaatgattattggt---ttcctattttgagattctattttgagcacaccagtgtagtttaatgataaaactgctgagttta 19390209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 19185116 - 19185066
Alignment:
Q  54 gattctattttgagcacaccagagtagtctaatgatagaactgctgaattt 104  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  19185116 gattctattttgagcacaccagagtagtctagtgatagaactgctgaattt 19185066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 41 - 140
Target Start/End: Complemental strand, 19489783 - 19489684
Alignment:
Q  41 tttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatttaagtcaatggaatgatttctatcatgcatccacact 140  Q
    |||||||||||| ||||||||||||||| ||||||||||| ||| ||||| ||||||||| |||| ||| | ||  |||||||||| |  ||||||||||    
T  19489783 tttcctattttgtgattctattttgagcgcaccagagtaggctagtgataaaactgctgattttacgtctacgggttgatttctattacacatccacact 19489684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 104
Target Start/End: Complemental strand, 16004342 - 16004292
Alignment:
Q  54 gattctattttgagcacaccagagtagtctaatgatagaactgctgaattt 104  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||||||    
T  16004342 gattctattttgagcacaccagagtagtctagtgatagaacagctgaattt 16004292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 15984425 - 15984474
Alignment:
Q  54 gattctattttgagcacaccagagtagtctaatgatagaactgctgaatt 103  Q
    ||||||||||| |||||||||||||||| || |||||||| |||||||||    
T  15984425 gattctatttttagcacaccagagtagtttagtgatagaattgctgaatt 15984474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 103
Target Start/End: Complemental strand, 15952832 - 15952771
Alignment:
Q  41 tttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaatt 103  Q
    ||||| |||||| ||||||||||| |||||||||||||||| || |||||||  |||||||||    
T  15952832 tttccaattttg-gattctatttttagcacaccagagtagtttagtgatagatttgctgaatt 15952771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 15977628 - 15977677
Alignment:
Q  54 gattctattttgagcacaccagagtagtctaatgatagaactgctgaatt 103  Q
    ||||||||||| |||| |||||||| || || ||||||||||||||||||    
T  15977628 gattctatttttagcataccagagttgtttagtgatagaactgctgaatt 15977677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 54 - 103
Target Start/End: Original strand, 19151225 - 19151274
Alignment:
Q  54 gattctattttgagcacaccagagtagtctaatgatagaactgctgaatt 103  Q
    ||||||||||| |||||||||||||||| || |||||||  |||||||||    
T  19151225 gattctatttttagcacaccagagtagtttagtgatagacttgctgaatt 19151274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 41 - 102
Target Start/End: Original strand, 36315086 - 36315147
Alignment:
Q  41 tttcctattttgagattctattttgagcacaccagagtagtctaatgatagaactgctgaat 102  Q
    |||||||| |||| ||||||||||||| ||||||||||| |||| ||||| ||||| |||||    
T  36315086 tttcctatcttgacattctattttgagaacaccagagtaatctagtgataaaactgttgaat 36315147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University