View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_3 (Length: 532)
Name: NF8081_low_3
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 16 - 515
Target Start/End: Original strand, 16285792 - 16286318
Alignment:
| Q |
16 |
aatatctggatgactgatgatgttatgataaaacgtgttcctcttttgtgtctccaaattgcttataatcttttggtttctcgttttctcttcttcatcc |
115 |
Q |
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| T |
16285792 |
aatatctggatgactgatgatgttatgataaaacgtgttcctcttttgtgtctccaaattgcttataatcttttggtttctcgttttctcttcttcatcc |
16285891 |
T |
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| Q |
116 |
tcaagcctcttcatgtgcctctcattgttgcacaaatgctggtaagcatattcataatttgaatcatcaatatacatgacatt----------------- |
198 |
Q |
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| T |
16285892 |
tcaagcctcttcatgtgcctctcattgttgcacaaatgttggtaagcatattcataatttgaatcatcaatatatatgacatttatctttttctgtatat |
16285991 |
T |
|
| Q |
199 |
---tgtttacaagttttaataaaatttatttgtttg-nnnnnnnnnnaatataaagaatgtgttgtcaattcgagttggcacgagtaattaaaaaactca |
294 |
Q |
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| T |
16285992 |
acatatttacaagttttaataaaatttatttgtttgtttttttttttaatataaagaatgtgttgtcaattcgagttggcacgagtaattaaaaaactca |
16286091 |
T |
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| Q |
295 |
tttagagactttagtttcttaagaatgagcgtttgaatttgccttaagttgttaaaatctctttaggcgttcaatccctttcgaagagaaaattagaa-- |
392 |
Q |
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||||||||||||||||| |||||| ||||||||||||| || || |||||||||||||||||||||| |||||| |||||||||||||||||||| |
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| T |
16286092 |
tttagagactttagttttttaagagtgagcgtttgaatctgtctgaagttgttaaaatctctttaggtactcaatcattttcgaagagaaaattagaaac |
16286191 |
T |
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| Q |
393 |
----atattgatgtgagcgaactgcaatcagatccattgactaaggttttggtagcgaattttatagataggaagnnnnnnnntgttatacactaaagtt |
488 |
Q |
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| T |
16286192 |
atttatattgatctgagcgaactgcaatcagatccattgactaaggttttggtagcgaattttatagataggaagaaaaaaaatgttatacactaaagtt |
16286291 |
T |
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| Q |
489 |
ggcatctaggttctctgacgtagatta |
515 |
Q |
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| T |
16286292 |
ggcatctaggttctctgacgtagatta |
16286318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 16 - 515
Target Start/End: Complemental strand, 17263982 - 17263461
Alignment:
| Q |
16 |
aatatctggatgactgatgatgttatgataaaacgtgttcctcttttgtgtctccaaattgcttataatcttttggtttctcgttttctcttcttcatcc |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17263982 |
aatatctggatgactgatgatgttatgataaaacgtgttcctcttttgtgtctccaaattgcttataatcttttggtttctcgttttctcttcttcatcc |
17263883 |
T |
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| Q |
116 |
tcaagcctcttcatgtgcctctcattgttgcacaaatgctggtaagcatattcataatttgaatcatcaatatacatgacatt----------------- |
198 |
Q |
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| T |
17263882 |
tcaagcctcttcatgtgcctctcattgttgcacaaatgttggtaagcatattcataatttgaatcatcaatatacatgacatttatctttttctgtatat |
17263783 |
T |
|
| Q |
199 |
---tgtttacaagttttaataaaatttatttgtttgnnnnnnnnnnaatataaagaatgtgttgtcaattcgagttggcacgagtaattaaaaaactcat |
295 |
Q |
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| T |
17263782 |
acatatttacaagttttaataaaatttatttgttt----tttttttaatataaagaatgtgttgtcaattcgagttggcacgagtagttaaaaaactcat |
17263687 |
T |
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| Q |
296 |
ttagagactttagtttcttaagaatgagcgtttgaat-ttgccttaagttgttaaaatctctttaggcgttcaatccctttcgaagagaaaattagaa-- |
392 |
Q |
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||||||||||||||||||||||| |||||||||||| | |||| |||||||||||||||||||||| | ||||||| |||||||||||||||||||| |
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| T |
17263686 |
ttagagactttagtttcttaagagggagcgtttgaatctcgcctgaagttgttaaaatctctttaggtgctcaatccttttcgaagagaaaattagaaac |
17263587 |
T |
|
| Q |
393 |
---atattgatgtgagcgaactgcaatcagatccattgactaaggttttggtagcgaattttatagataggaagnnnnnnnntgttatacactaaagttg |
489 |
Q |
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| T |
17263586 |
attatattgatgtgagcgaactgtaatcagatccattgactaaggttttggtagtgaattttatagataggaagaaaaaaaatgctatacactaaagttg |
17263487 |
T |
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| Q |
490 |
gcatctaggttctctgacgtagatta |
515 |
Q |
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|||||||||||||||||||||||||| |
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| T |
17263486 |
gcatctaggttctctgacgtagatta |
17263461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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