View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8081_low_4 (Length: 528)

Name: NF8081_low_4
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8081_low_4
NF8081_low_4
[»] chr1 (8 HSPs)
chr1 (26-519)||(4118913-4119406)
chr1 (228-348)||(32024950-32025070)
chr1 (228-348)||(32025246-32025366)
chr1 (228-348)||(32025542-32025662)
chr1 (228-328)||(9448644-9448744)
chr1 (226-348)||(31412393-31412515)
chr1 (269-346)||(34228434-34228511)
chr1 (228-342)||(34228194-34228307)
[»] chr2 (14 HSPs)
chr2 (230-348)||(26533280-26533398)
chr2 (236-348)||(26533582-26533695)
chr2 (228-348)||(21089075-21089195)
chr2 (228-348)||(44279301-44279421)
chr2 (241-348)||(31074227-31074334)
chr2 (268-348)||(8596464-8596544)
chr2 (228-322)||(38144014-38144108)
chr2 (230-331)||(23974903-23975004)
chr2 (243-327)||(28163211-28163295)
chr2 (271-346)||(23974740-23974815)
chr2 (241-307)||(14914466-14914532)
chr2 (268-348)||(44279044-44279125)
chr2 (292-348)||(14913565-14913621)
chr2 (256-316)||(41085553-41085613)
[»] scaffold0251 (1 HSPs)
scaffold0251 (228-348)||(12600-12720)
[»] chr7 (13 HSPs)
chr7 (226-313)||(17944563-17944650)
chr7 (236-348)||(37223842-37223954)
chr7 (228-348)||(8356211-8356331)
chr7 (236-326)||(25193996-25194086)
chr7 (228-348)||(37223547-37223665)
chr7 (228-348)||(13789497-13789617)
chr7 (228-348)||(23071744-23071864)
chr7 (237-348)||(2196756-2196867)
chr7 (228-317)||(45834816-45834905)
chr7 (228-348)||(3958347-3958467)
chr7 (252-317)||(25194446-25194511)
chr7 (252-320)||(2304920-2304988)
chr7 (268-348)||(2414306-2414386)
[»] scaffold0007 (1 HSPs)
scaffold0007 (228-348)||(262120-262240)
[»] chr6 (6 HSPs)
chr6 (228-348)||(30045446-30045566)
chr6 (236-348)||(1702160-1702272)
chr6 (240-348)||(4140087-4140195)
chr6 (228-349)||(1701880-1702001)
chr6 (227-349)||(32729550-32729672)
chr6 (268-348)||(33447681-33447761)
[»] chr4 (12 HSPs)
chr4 (228-348)||(19987645-19987765)
chr4 (228-348)||(19987939-19988059)
chr4 (227-348)||(38978712-38978830)
chr4 (246-348)||(7833755-7833857)
chr4 (226-348)||(8107414-8107536)
chr4 (230-348)||(11028757-11028874)
chr4 (236-349)||(8107134-8107246)
chr4 (230-279)||(18977185-18977234)
chr4 (280-348)||(45015670-45015738)
chr4 (239-346)||(18936135-18936242)
chr4 (228-285)||(41206465-41206522)
chr4 (462-506)||(34945714-34945758)
[»] chr5 (9 HSPs)
chr5 (236-348)||(15173456-15173568)
chr5 (236-348)||(22586966-22587078)
chr5 (228-348)||(36975926-36976046)
chr5 (242-348)||(15226122-15226228)
chr5 (228-348)||(10567339-10567459)
chr5 (228-348)||(22599062-22599182)
chr5 (228-339)||(36975237-36975348)
chr5 (228-349)||(10321572-10321693)
chr5 (292-348)||(9969396-9969452)
[»] chr3 (4 HSPs)
chr3 (228-348)||(3870769-3870889)
chr3 (243-348)||(15002154-15002259)
chr3 (282-348)||(7407878-7407944)
chr3 (243-290)||(15002403-15002450)
[»] chr8 (10 HSPs)
chr8 (236-346)||(21008422-21008532)
chr8 (241-317)||(21373430-21373506)
chr8 (240-348)||(34373597-34373705)
chr8 (236-327)||(15937831-15937922)
chr8 (228-348)||(21397237-21397357)
chr8 (228-348)||(21791730-21791850)
chr8 (228-324)||(24196136-24196232)
chr8 (243-348)||(34373894-34373998)
chr8 (270-348)||(33446015-33446093)
chr8 (271-315)||(34074334-34074378)


Alignment Details
Target: chr1 (Bit Score: 442; Significance: 0; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 442; E-Value: 0
Query Start/End: Original strand, 26 - 519
Target Start/End: Original strand, 4118913 - 4119406
Alignment:
Q  26 agaaatagtgtatacataagtgggactgttaaaacaaactgactgcactgaaaaaacttaactatgactggcagttcatgaactgaacaagttcggttca 125  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  4118913 agaaatagtgtatacataagtgggactgttaaaacaaactcactgcactgaaaaaacttaactatgactggcagttcgtgaactgaacaagttcggttca 4119012  T
Q  126 gtttgtgaactatttgtcactgttcagtttttttcagttccgnnnnnnnnaaacaatcctaatatccaattcggttctatatttggtttttattcaacgg 225  Q
    ||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4119013 gtttgtgaactatttgtcactgttcagtttttttcagttccgttttttttaaacaatcctaatatccaattcggttctatatttggtttttattcaacgg 4119112  T
Q  226 tctgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctct 325  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4119113 tctgttaggagtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctct 4119212  T
Q  326 ccttatgagcttaagtcctaacatgaccctaattataatcaaataatagcaactcgatacagttttgttcgaaaaagtactattaacttttctatgaagg 425  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| ||||||||||||||||||||||||||||||||||    
T  4119213 ccttatgagcttaagtcctaacatgaccctaattataatcaaaaaatagcaacttgatacagtttggttcgaaaaagtactattaacttttctatgaagg 4119312  T
Q  426 tagttccagttcggttcgggttgaacttctatagcagtttagttcggtttccttcttgaactgaacaataaacaatcctatacataagtattat 519  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  4119313 tagttccagttcggttcgggttgaacttctatagcagtttagttcggtttccttcttgaactgaacaataaacaatcctatacataagcattat 4119406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 32024950 - 32025070
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||||||    
T  32024950 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 32025049  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  32025050 tcatgggcttaagtcctaaca 32025070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 32025246 - 32025366
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||||||    
T  32025246 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 32025345  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  32025346 tcatgggcttaagtcctaaca 32025366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 32025542 - 32025662
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||||||    
T  32025542 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 32025641  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  32025642 tcatgggcttaagtcctaaca 32025662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 228 - 328
Target Start/End: Complemental strand, 9448744 - 9448644
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||||||    
T  9448744 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 9448645  T
Q  328 t 328  Q
    |    
T  9448644 t 9448644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 226 - 348
Target Start/End: Complemental strand, 31412515 - 31412393
Alignment:
Q  226 tctgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctct 325  Q
    ||||||||| |||||||||||||||||| ||| || | ||  ||||||||||||| ||||| ||| ||||| | |  ||||||||||||||| || ||||    
T  31412515 tctgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccgtgaggttctcccacctattcaactagtcttttgggttggactct 31412416  T
Q  326 ccttatgagcttaagtcctaaca 348  Q
    ||| |||  |||| |||||||||    
T  31412415 cctcatggacttaggtcctaaca 31412393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 269 - 346
Target Start/End: Complemental strand, 34228511 - 34228434
Alignment:
Q  269 ggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaa 346  Q
    ||||||||||| |||||||||| ||||  |||||||||||||||||||| || ||||||| |||  ||||||||||||    
T  34228511 ggtacttaagctatgaggctctcccacttaatggactagtcttttgggttggactctcctcatggacttaagtcctaa 34228434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 342
Target Start/End: Complemental strand, 34228307 - 34228194
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||| || |||||||||||| ||    ||||||| ||||||||||||||| | ||| |||||||| |||||||| || |||||||||    
T  34228307 tgttaggagtcccacattgactagataaaagtgctcagtgtggtact-aagccatgaggctctccgacctaatggactggtcttttgagttgggctctcc 34228209  T
Q  328 ttatgagcttaagtc 342  Q
    |  || |||||||||    
T  34228208 tcgtgggcttaagtc 34228194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 2e-29; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 26533280 - 26533398
Alignment:
Q  230 ttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcctt 329  Q
    ||||| |||||||||||||||||| |||||| | ||  |||||||||| |||||||| ||| ||||| |||||||||||||||||||| ||||||||||     
T  26533280 ttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaccatgaggttctcccacctaatggactagtcttttgggttgggctctcctc 26533379  T
Q  330 atgagcttaagtcctaaca 348  Q
    ||| |||||||||||||||    
T  26533380 atgggcttaagtcctaaca 26533398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 26533582 - 26533695
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaag-ccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgag 334  Q
    |||||||||||||||||| |||||| | ||  ||||||||||  |||||||| ||| ||||| | |||||||||||||||||| |||||||||| ||| |    
T  26533582 gtcccacatcgagtagatcaaagtgcttgatgtggtacttaaaaccatgaggttctcccacctattggactagtcttttgggttgggctctcctcatggg 26533681  T
Q  335 cttaagtcctaaca 348  Q
    ||||||||||||||    
T  26533682 cttaagtcctaaca 26533695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 21089075 - 21089195
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| |||| ||||||  |  ||||| |||| |||| ||||||||| ||| |||||| ||||||||||||| ||||||||     
T  21089075 tgttaggagtcccacatcgagtaaataagagtgttttatgtggtatttaaaccatcaggctctgcgacctaatggattagtcttttgggttgggctctct 21089174  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||| ||||||||    
T  21089175 tcatgggcttaaatcctaaca 21089195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 44279301 - 44279421
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| |||||||||| ||||||| |||||||| ||   ||||||||| || ||||| ||| ||||| | | ||||| |||||||||| |||||||||    
T  44279301 tgttaggagtcccacatcaagtagatcaaagtgtttgatgcggtacttaaaccttgaggttctcccacctattagactaatcttttgggttgggctctcc 44279400  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | | |||||||||||||||||    
T  44279401 tcacgagcttaagtcctaaca 44279421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 241 - 348
Target Start/End: Original strand, 31074227 - 31074334
Alignment:
Q  241 acatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaag 340  Q
    ||||||||||||| ||||| || ||  ||||||||||||||||||| |||   | | | |||||||||||||||||| |||||||||| ||| |||||||    
T  31074227 acatcgagtagatcaaagtatttgatgtggtacttaagccatgaggttctcatatctattggactagtcttttgggttgggctctcctcatgggcttaag 31074326  T
Q  341 tcctaaca 348  Q
    ||||||||    
T  31074327 tcctaaca 31074334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 8596544 - 8596464
Alignment:
Q  268 tggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| ||||||||||  || |||||||||||||||    
T  8596544 tggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcctcgtgggcttaagtcctaaca 8596464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 228 - 322
Target Start/End: Original strand, 38144014 - 38144108
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggc 322  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| ||||    
T  38144014 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggc 38144108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 230 - 331
Target Start/End: Original strand, 23974903 - 23975004
Alignment:
Q  230 ttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcctt 329  Q
    ||||| || ||||||||||||| |||||||| || |  |||||||||||||||||| ||||  |||| |||| |||||| | |||||| || ||||||||    
T  23974903 ttaggagttccacatcgagtagttaaaagtgctcaatgtggtacttaagccatgagactctttcacctaatgtactagtttgttgggttggactctcctt 23975002  T
Q  330 at 331  Q
    ||    
T  23975003 at 23975004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 243 - 327
Target Start/End: Original strand, 28163211 - 28163295
Alignment:
Q  243 atcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||||| |||||||||| |||||| || ||||||| ||||| ||| ||||  ||||||||||| |||||||| | |||||||    
T  28163211 atcgagtaggtaaaagtgtttgacatgatatttaagccgtgaggttctcccacttaatggactagtattttgggttgagctctcc 28163295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 271 - 346
Target Start/End: Original strand, 23974740 - 23974815
Alignment:
Q  271 tacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaa 346  Q
    |||||||||| ||||||||| |  || |||| ||||||||||||||||||||||| || |||  ||||||||||||    
T  23974740 tacttaagccgtgaggctctcctgcctaatgtactagtcttttgggtcgggctctgctcatgttcttaagtcctaa 23974815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 241 - 307
Target Start/End: Complemental strand, 14914532 - 14914466
Alignment:
Q  241 acatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactag 307  Q
    ||||||||||||||||| |||||||| ||||||||||| |||||| || | | ||| ||||||||||    
T  14914532 acatcgagtagataaaaatgttcgacgtggtacttaagtcatgagactttcctacctaatggactag 14914466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 44279044 - 44279125
Alignment:
Q  268 tggtacttaagccatgaggctctgccaccgaatggactagtctttt-gggtcgggctctccttatgagcttaagtcctaaca 348  Q
    |||||||||| |||||||| ||| ||||| | |||| ||||||||| |||| |||||||||| | | | |||||||||||||    
T  44279044 tggtacttaaaccatgaggttctcccacctattggagtagtctttttgggttgggctctcctcacgggtttaagtcctaaca 44279125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 292 - 348
Target Start/End: Complemental strand, 14913621 - 14913565
Alignment:
Q  292 ccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    ||||| |||||||||||||||| ||| |||||| ||| ||  |||||||||||||||    
T  14913621 ccacctaatggactagtcttttcggttgggctcccctcataggcttaagtcctaaca 14913565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 41085553 - 41085613
Alignment:
Q  256 aagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttggg 316  Q
    ||||||| || |||||||||||| ||||| ||||| ||||| || | ||||||||||||||    
T  41085553 aagtgtttgaaatggtacttaagtcatgaagctctcccacctaacgaactagtcttttggg 41085613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 12600 - 12720
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| |||||||||||||||||| |||||| | ||  || |||||||||||||||| ||| ||||| | |||||||||||||||||| |||||||||    
T  12600 tgttaggagtcccacatcgagtagatcaaagtgcttgatgtgttacttaagccatgaggttcttccacctattggactagtcttttgggttgggctctcc 12699  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| ||||| |||||||||    
T  12700 tcatgggcttaggtcctaaca 12720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 2e-25; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 226 - 313
Target Start/End: Original strand, 17944563 - 17944650
Alignment:
Q  226 tctgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtctttt 313  Q
    ||||||||| ||||||||||||||||||||||||| ||||  ||||||||||||||||||||||| ||| | ||||||||||||||||    
T  17944563 tctgttaggagtcccacatcgagtagataaaagtgctcgatgtggtacttaagccatgaggctctcccatctaatggactagtctttt 17944650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 236 - 348
Target Start/End: Original strand, 37223842 - 37223954
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagc 335  Q
    ||||||||| ||||||||||||||| || |   ||||||||||||||||| |||| ||||| ||||||||||||||  | || |||||||||||||| ||    
T  37223842 gtcccacattgagtagataaaagtgctcaatgaggtacttaagccatgagactctcccacctaatggactagtcttaggcgttgggctctccttatgggc 37223941  T
Q  336 ttaagtcctaaca 348  Q
    |||||||||||||    
T  37223942 ttaagtcctaaca 37223954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 8356331 - 8356211
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| |  |||||||| |||||||| |||||||||    
T  8356331 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctataggactagttttttgggttgggctctcc 8356232  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  8356231 tcatgggcttaagtcctaaca 8356211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 236 - 326
Target Start/End: Original strand, 25193996 - 25194086
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctc 326  Q
    ||||||||||| ||| |||||| |||| ||  ||||||||||||||||||||||| ||||| |||||| ||||||||||||| ||||||||    
T  25193996 gtcccacatcgggtaaataaaaatgtttgatgtggtacttaagccatgaggctcttccacctaatggattagtcttttgggttgggctctc 25194086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 37223547 - 37223665
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||| |||||| ||||  ||||| |  ||||||||||||||| ||||||| ||||| ||||||||||  |||| ||| |||||||||    
T  37223547 tgttaggagtcccacattgagtagttaaatatgttcaatgtggtacttaagccattaggctctcccacctaatggactag--tttttggttgggctctcc 37223644  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  37223645 tcatgtgcttaagtcctaaca 37223665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 13789617 - 13789497
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||| |||  |||||||| | ||  |||||||||||||||| |||||| ||||| | ||||||||| |||| ||| |||||||||    
T  13789617 tgttaggagtcccacatcgggtaactaaaagtgcttgatgtggtacttaagccatggggctctcccacctattggactagttttttaggttgggctctcc 13789518  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    |  || |||||||||||||||    
T  13789517 tcttgggcttaagtcctaaca 13789497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 23071744 - 23071864
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||| |||||||||||| ||| |||| ||  |||||||||| |||||| | ||| ||||| | |||||||||||||||||| ||||||||     
T  23071744 tgttaggagtccctcatcgagtagatcaaaatgtttgatgtggtacttaaaccatgaagttctcccacctattggactagtcttttgggttgggctctca 23071843  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||| ||||||||    
T  23071844 tcatgggcttaaatcctaaca 23071864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 237 - 348
Target Start/End: Original strand, 2196756 - 2196867
Alignment:
Q  237 tcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagct 336  Q
    |||||||||||||||||||||  | | ||  ||||||||||| |||||| |||| ||||| ||| |||||||| ||||| | | ||||||||  ||||||    
T  2196756 tcccacatcgagtagataaaaaagcttgatgtggtacttaagtcatgagactcttccacctaatagactagtcatttggattgagctctcctcgtgagct 2196855  T
Q  337 taagtcctaaca 348  Q
    ||||| ||||||    
T  2196856 taagtgctaaca 2196867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 317
Target Start/End: Complemental strand, 45834905 - 45834816
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggt 317  Q
    ||||||| |||||| || ||||||||||||||| || | ||| |||||| ||||||| ||||| ||||  ||| ||||||||||||||||    
T  45834905 tgttaggagtcccatattgagtagataaaagtgctcaatatgatacttacgccatgatgctctcccacataatagactagtcttttgggt 45834816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 3958467 - 3958347
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||| |||||||||||||| |||||  | ||  ||||||||||| ||||||| ||| ||| | |  ||||||||||||||| | |||||||||    
T  3958467 tgttaggagtctcacatcgagtagatcaaagtacttgatgtggtacttaagtcatgaggttctcccatctataggactagtcttttggattgggctctcc 3958368  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||   ||||||||||||||    
T  3958367 tcattgacttaagtcctaaca 3958347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 317
Target Start/End: Original strand, 25194446 - 25194511
Alignment:
Q  252 ataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggt 317  Q
    ||||||||||| || || |||| |||||||||||||||| || || |||| |||||| ||||||||    
T  25194446 ataaaagtgtttgatatagtacataagccatgaggctctcccccctaatgaactagtgttttgggt 25194511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 252 - 320
Target Start/End: Original strand, 2304920 - 2304988
Alignment:
Q  252 ataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgg 320  Q
    ||||||||||| ||  || || ||||| ||||||||||| ||||| ||||||  |||||||||||||||    
T  2304920 ataaaagtgtttgatgtgatatttaagtcatgaggctctcccaccaaatggatcagtcttttgggtcgg 2304988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 348
Target Start/End: Complemental strand, 2414386 - 2414306
Alignment:
Q  268 tggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    ||||| ||||| |||||| |||| ||||| |||| |||||| ||| |||| |  ||||||| ||||| |||||||||||||    
T  2414386 tggtatttaagtcatgagactctcccacctaatgaactagtatttggggttgaactctcctcatgagtttaagtcctaaca 2414306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 262120 - 262240
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||||||    
T  262120 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 262219  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  262220 tcatgggcttaagtcctaaca 262240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 30045446 - 30045566
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||||||| || |||||| | ||  ||||||||||||| ||||| ||| ||||| | ||||||||| |||||||| |||||||||    
T  30045446 tgttaggagtcccacatcgagtatatcaaagtgcttgatgtggtacttaagccttgaggttctcccacctattggactagttttttgggttgggctctcc 30045545  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  30045546 tcatgggcttaagtcctaaca 30045566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 1702272 - 1702160
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagc 335  Q
    |||||||||||||||||| ||| |||| ||  ||||||||||||||||||| ||| | | | | |||| | ||||||||||| ||||||| || |||||     
T  1702272 gtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcctatctattggattggtcttttgggttgggctcttctcatgaga 1702173  T
Q  336 ttaagtcctaaca 348  Q
    |||||||||||||    
T  1702172 ttaagtcctaaca 1702160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 348
Target Start/End: Original strand, 4140087 - 4140195
Alignment:
Q  240 cacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaa 339  Q
    ||||| || |||||||||||| || | ||||||||||||||||||| |||| ||||  |||| ||||||||||||||| || ||||| | ||| ||||||    
T  4140087 cacattgaatagataaaagtgctcaatatggtacttaagccatgagactctcccacgtaatgaactagtcttttgggttggactctcttcatgggcttaa 4140186  T
Q  340 gtcctaaca 348  Q
     ||||||||    
T  4140187 atcctaaca 4140195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 228 - 349
Target Start/End: Complemental strand, 1702001 - 1701880
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||| |||||||||||||| ||| |  | ||  |||||||||||||| |||| ||| ||||  | |||||||||||||| ||| || ||||||    
T  1702001 tgttaggagtctcacatcgagtagatcaaaatacttgatgtggtacttaagccaagaggttctcccacttattggactagtcttttaggttggcctctcc 1701902  T
Q  328 ttatgagcttaagtcctaacat 349  Q
    | |||| |||||||||||||||    
T  1701901 tcatgaccttaagtcctaacat 1701880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 227 - 349
Target Start/End: Original strand, 32729550 - 32729672
Alignment:
Q  227 ctgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctc 326  Q
    |||||||| ||| |||||||||||||| ||| || | ||  || |||||||| ||||| | ||| ||||| | ||||||||||||||| || ||||||||    
T  32729550 ctgttaggagtctcacatcgagtagatcaaactgcttgatgtgatacttaagtcatgaagttctcccacctattggactagtcttttgagttgggctctc 32729649  T
Q  327 cttatgagcttaagtcctaacat 349  Q
    || |||  | |||||||||||||    
T  32729650 ctcatggacgtaagtcctaacat 32729672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 268 - 348
Target Start/End: Original strand, 33447681 - 33447761
Alignment:
Q  268 tggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    |||||||||| ||||||| |||  ||||| | || ||||||||||||||| |  |||||||  ||| ||||||||||||||    
T  33447681 tggtacttaaaccatgagactcgtccaccaattgaactagtcttttgggttgaactctcctcgtgaacttaagtcctaaca 33447761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 19987645 - 19987765
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| |||||||||||||||||| ||| |||| ||  ||||||||||||||||||| ||| ||||| | |||||||||||| |||||  ||||||||    
T  19987645 tgttaggagtcccacatcgagtagatcaaaatgtttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttaggctctcc 19987744  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | |||  ||||||||||||||    
T  19987745 tcatggacttaagtcctaaca 19987765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 19987939 - 19988059
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| |||||||||||||||||| ||| || | ||  ||||||||||||||||||| ||| ||||| | |||||||||||| ||||| |||||||||    
T  19987939 tgttaggagtcccacatcgagtagatcaaaatgcttgatgtggtacttaagccatgaggttctcccacctattggactagtcttctgggttgggctctcc 19988038  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | |||  ||||||||| ||||    
T  19988039 tcatggacttaagtcccaaca 19988059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 227 - 348
Target Start/End: Original strand, 38978712 - 38978830
Alignment:
Q  227 ctgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctc 326  Q
    |||||||| ||||||||| ||||||||||||||||| ||  |||||||||| |||||||||||| ||||| |||||| ||||||||| ||| || || ||    
T  38978712 ctgttaggagtcccacatggagtagataaaagtgtttgatgtggtacttaaaccatgaggctcttccacctaatggattagtctttttggttggactttc 38978811  T
Q  327 cttatgagcttaagtcctaaca 348  Q
       ||| |||||||||||||||    
T  38978812 ---atgggcttaagtcctaaca 38978830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 246 - 348
Target Start/End: Complemental strand, 7833857 - 7833755
Alignment:
Q  246 gagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtccta 345  Q
    ||||||||||||||| | ||  ||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| |  ||| ||| ||||||||||||    
T  7833857 gagtagataaaagtgcttgatgtggtacttaagtcatgaggctctcccacctaatggactagtcttttgggttgggtttccctcatgggcttaagtccta 7833758  T
Q  346 aca 348  Q
    |||    
T  7833757 aca 7833755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 226 - 348
Target Start/End: Complemental strand, 8107536 - 8107414
Alignment:
Q  226 tctgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctct 325  Q
    ||||||||| |||||||||||||||||| |||||| | ||  |||||||||||| |||||| ||| ||| | | || ||||| |||||| || |||||||    
T  8107536 tctgttaggagtcccacatcgagtagatcaaagtgcttgatgtggtacttaagctatgaggttctcccatccattgaactagccttttgagttgggctct 8107437  T
Q  326 ccttatgagcttaagtcctaaca 348  Q
    ||||||| |||| ||||||||||    
T  8107436 ccttatgggcttcagtcctaaca 8107414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 348
Target Start/End: Original strand, 11028757 - 11028874
Alignment:
Q  230 ttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcctt 329  Q
    ||||| ||| ||||||||||| ||||||||||| ||  || || |||| |||||||| |||  |||| ||||||||| | |||||||| || |||| ||     
T  11028757 ttaggagtctcacatcgagtaaataaaagtgtttgatgtgatatttaaaccatgaggatctctcacctaatggacta-ttttttgggttggtctcttctc 11028855  T
Q  330 atgagcttaagtcctaaca 348  Q
    ||| |||||||||||||||    
T  11028856 atgggcttaagtcctaaca 11028874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 236 - 349
Target Start/End: Complemental strand, 8107246 - 8107134
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagc 335  Q
    |||||||||| |||| || |||||||| ||   |||||||||||||||| | ||| ||||| | ||||||| ||||||  || || ||||||| ||| ||    
T  8107246 gtcccacatcaagtatatcaaagtgtttgatccggtacttaagccatgatgttctcccacccattggactaatctttt-cgttggactctcctcatgggc 8107148  T
Q  336 ttaagtcctaacat 349  Q
    ||||||||||||||    
T  8107147 ttaagtcctaacat 8107134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 230 - 279
Target Start/End: Original strand, 18977185 - 18977234
Alignment:
Q  230 ttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagc 279  Q
    ||||| |||||| |||||| ||||||||||||||||| ||||||||||||    
T  18977185 ttaggagtcccatatcgagcagataaaagtgttcgacgtggtacttaagc 18977234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 280 - 348
Target Start/End: Complemental strand, 45015738 - 45015670
Alignment:
Q  280 catgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    ||||||||||| | | | ||||||||||| ||||||||||| ||||| | ||| |||||||||||||||    
T  45015738 catgaggctctcctatctaatggactagttttttgggtcggactctcttcatgggcttaagtcctaaca 45015670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 239 - 346
Target Start/End: Original strand, 18936135 - 18936242
Alignment:
Q  239 ccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagctta 338  Q
    ||||||||  || ||||||||||| ||  || |||||| | || ||| |||| ||||  ||| || ||||||||||||| |||||||||| ||| |||||    
T  18936135 ccacatcggttaaataaaagtgtttgatgtgatacttacgtcacgagactctcccacttaatagaatagtcttttgggttgggctctcctcatgggctta 18936234  T
Q  339 agtcctaa 346  Q
    ||||||||    
T  18936235 agtcctaa 18936242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 228 - 285
Target Start/End: Original strand, 41206465 - 41206522
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgag 285  Q
    ||||||| |||||| |||||||||||||||||||| ||  ||||| ||||| ||||||    
T  41206465 tgttaggcgtcccatatcgagtagataaaagtgtttgatgtggtatttaagtcatgag 41206522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 462 - 506
Target Start/End: Complemental strand, 34945758 - 34945714
Alignment:
Q  462 gtttagttcggtttccttcttgaactgaacaataaacaatcctat 506  Q
    ||||||||||||||||||| ||||| |||| || |||||||||||    
T  34945758 gtttagttcggtttccttcctgaaccgaaccatcaacaatcctat 34945714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 4e-21; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 15173568 - 15173456
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagc 335  Q
    |||||||| || |||| |||||||| | ||  |||||||||| |||||||||||| |||||   |||||||||||||||||| |||||||||| ||| ||    
T  15173568 gtcccacaccgggtagctaaaagtgcttgatgtggtacttaacccatgaggctctcccaccttttggactagtcttttgggttgggctctcctcatgggc 15173469  T
Q  336 ttaagtcctaaca 348  Q
    |||||||||||||    
T  15173468 ttaagtcctaaca 15173456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 236 - 348
Target Start/End: Complemental strand, 22587078 - 22586966
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagc 335  Q
    |||||||||||||||  |||||||||| ||  | |||||||||||||||||||||  |||| | ||||||||||||||||||  |||||| || ||| ||    
T  22587078 gtcccacatcgagtaactaaaagtgtttgatgtagtacttaagccatgaggctctcacacctattggactagtcttttgggtttggctcttctcatgggc 22586979  T
Q  336 ttaagtcctaaca 348  Q
    |||||||||||||    
T  22586978 ttaagtcctaaca 22586966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 36975926 - 36976046
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| |||||||||||||||||| |||||||| ||  ||||| ||||| ||| ||||||| |||||   ||||||||||||||||||  ||||||||    
T  36975926 tgttaggagtcccacatcgagtagatcaaagtgtttgatgtggtatttaagtcataaggctctcccacctgttggactagtcttttgggttaggctctcc 36976025  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||| ||||||||    
T  36976026 tcatgggcttaaatcctaaca 36976046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 242 - 348
Target Start/End: Complemental strand, 15226228 - 15226122
Alignment:
Q  242 catcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagt 341  Q
    |||| ||||||||||||||  |||| |||||||||||| ||||||||||||||   ||||||||| |||||||| | | |||||||| ||| ||||||||    
T  15226228 catcaagtagataaaagtgcccgacgtggtacttaagctatgaggctctgccaattaatggactattcttttggattgagctctcctcatgggcttaagt 15226129  T
Q  342 cctaaca 348  Q
    |||||||    
T  15226128 cctaaca 15226122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 10567339 - 10567459
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||| ||||| || |||||| | ||  || |||||||| ||||||| ||| ||||| | || ||||||||||||||| |||||||||    
T  10567339 tgttaggagtcccacattgagtatatcaaagtgcttgatgtgatacttaaggcatgaggttctcccacctattgcactagtcttttgggttgggctctcc 10567438  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  10567439 tcatgggcttaagtcctaaca 10567459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 22599182 - 22599062
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||| |||  |||||||||| || |||||||||||| |||||||||||  || | | |||||||||||||| ||| |  || | |    
T  22599182 tgttaggagtcccacatcgggtaactaaaagtgtttgatatggtacttaagtcatgaggctctctcatctattggactagtcttttaggttgaacttttc 22599083  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  22599082 tcatgggcttaagtcctaaca 22599062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 228 - 339
Target Start/End: Original strand, 36975237 - 36975348
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| |||||||||||||||||| |||||||| ||  | ||| ||||| ||| ||||||| ||| | | || ||||||||||||||| ||||||||     
T  36975237 tgttaggagtcccacatcgagtagattaaagtgtttgatgtagtatttaagtcataaggctctcccatctattgaactagtcttttgggttgggctctct 36975336  T
Q  328 ttatgagcttaa 339  Q
    | ||| ||||||    
T  36975337 tcatgggcttaa 36975348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 228 - 349
Target Start/End: Complemental strand, 10321693 - 10321572
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||||||   || ||||||||||| ||  |||||||||||||||||||||||   ||| | ||||||| ||||||| || | |||||||    
T  10321693 tgttaggagtcccacatcagataaataaaagtgtttgatgtggtacttaagccatgaggctctcttacctattggactaatcttttgagttgagctctcc 10321594  T
Q  328 ttatgagcttaagtcctaacat 349  Q
    | |||  |||||||| ||||||    
T  10321593 tcatggccttaagtcttaacat 10321572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 292 - 348
Target Start/End: Original strand, 9969396 - 9969452
Alignment:
Q  292 ccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    ||||| |||| |||||||||||||||||| ||||| | ||| |||||||||||||||    
T  9969396 ccacctaatgtactagtcttttgggtcggtctctcttcatgtgcttaagtcctaaca 9969452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 9e-19; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 228 - 348
Target Start/End: Complemental strand, 3870889 - 3870769
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||| ||||||||||||||  || || | ||  |||||||||||| | |||||||| |||||   |||||||||||||||||| |||||||||    
T  3870889 tgttaggagtctcacatcgagtagatttaaatgcttgatgtggtacttaagctacgaggctctcccaccatttggactagtcttttgggttgggctctcc 3870790  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||||||||||||    
T  3870789 tcatgggcttaagtcctaaca 3870769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 348
Target Start/End: Original strand, 15002154 - 15002259
Alignment:
Q  243 atcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtc 342  Q
    |||||||||||||||||||||||| |||| |||||| |||||| ||||  |||| ||  ||||||||||||||||  |||||| || |||  ||||||||    
T  15002154 atcgagtagataaaagtgttcgacgtggtgcttaagtcatgagcctctttcacctaaatgactagtcttttgggttaggctctactcatggacttaagtc 15002253  T
Q  343 ctaaca 348  Q
     |||||    
T  15002254 ataaca 15002259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 282 - 348
Target Start/End: Original strand, 7407878 - 7407944
Alignment:
Q  282 tgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    ||||| ||| ||||| | ||||||||| |||||||| |||||||||| ||| |||||||||||||||    
T  7407878 tgaggttctcccacctattggactagttttttgggttgggctctcctcatgggcttaagtcctaaca 7407944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 15002403 - 15002450
Alignment:
Q  243 atcgagtagataaaagtgttcgacatggtacttaagccatgaggctct 290  Q
    ||||||||| |||||||| ||||| | |||||||||||||||||||||    
T  15002403 atcgagtagttaaaagtgctcgacgtagtacttaagccatgaggctct 15002450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 236 - 346
Target Start/End: Complemental strand, 21008532 - 21008422
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagc 335  Q
    ||||||||||||||| ||||||||||| |   |||||||||||  | |||||||  ||||| |||||||| ||||||||||| |||||||||| ||| |     
T  21008532 gtcccacatcgagtacataaaagtgtttgttgtggtacttaagttacgaggctcccccacctaatggacttgtcttttgggttgggctctcctcatgggt 21008433  T
Q  336 ttaagtcctaa 346  Q
    |||||||||||    
T  21008432 ttaagtcctaa 21008422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 241 - 317
Target Start/End: Complemental strand, 21373506 - 21373430
Alignment:
Q  241 acatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggt 317  Q
    |||||||||||||||||||| || ||||||||||||| ||||| |||||| ||||| |||||| ||| |||||||||    
T  21373506 acatcgagtagataaaagtgctcaacatggtacttaatccatgcggctcttccacctaatggagtagccttttgggt 21373430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 240 - 348
Target Start/End: Complemental strand, 34373705 - 34373597
Alignment:
Q  240 cacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaa 339  Q
    |||||||||||||| |||||| | ||  | ||||||||| | ||||| ||| ||||| | |||||||||||||||| | |||||||||| ||||||||||    
T  34373705 cacatcgagtagattaaagtgcttgatgtagtacttaagtcgtgaggttctcccacctattggactagtcttttggattgggctctcctcatgagcttaa 34373606  T
Q  340 gtcctaaca 348  Q
     ||||||||    
T  34373605 atcctaaca 34373597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 236 - 327
Target Start/End: Complemental strand, 15937922 - 15937831
Alignment:
Q  236 gtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||||||| ||| |||||| || | ||  |||||||||||||||||| |||| ||||| |||||||||||||||||||| ||| |||||    
T  15937922 gtcccacatcgggtatataaaattgcttgatgtggtacttaagccatgagtctctcccacctaatggactagtcttttgggttgggatctcc 15937831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 21397237 - 21397357
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||| ||||||||||||||||| | ||  ||||| |||| ||| | |||||| ||||| ||||||||||||||||   | ||||||| |    
T  21397237 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtcttttcaattgggctctgc 21397336  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||| ||||||||    
T  21397337 taatgggcttaaatcctaaca 21397357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 348
Target Start/End: Original strand, 21791730 - 21791850
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctcc 327  Q
    ||||||| ||||||| ||||||||||||||||| | ||  ||||| |||| ||| | |||||| ||||| ||||||||||||||||   | ||||||| |    
T  21791730 tgttaggagtcccacgtcgagtagataaaagtgattgatgtggtatttaaaccacggggctctcccacctaatggactagtcttttcaattgggctctgc 21791829  T
Q  328 ttatgagcttaagtcctaaca 348  Q
    | ||| |||||| ||||||||    
T  21791830 taatgggcttaaatcctaaca 21791850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 228 - 324
Target Start/End: Complemental strand, 24196232 - 24196136
Alignment:
Q  228 tgttaggggtcccacatcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctc 324  Q
    ||||||| || ||||||||| |||||||||||  ||||| |||| ||||||| |||||||||  ||||| |||||| |||| |||||||| ||||||    
T  24196232 tgttaggagttccacatcgattagataaaagttatcgacgtggtgcttaagctatgaggctcccccacctaatggattagtattttgggttgggctc 24196136  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 243 - 348
Target Start/End: Complemental strand, 34373998 - 34373894
Alignment:
Q  243 atcgagtagataaaagtgttcgacatggtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtc 342  Q
    ||||||||||| |||||| | ||  ||||||||||||| ||||| ||| | ||  | ||||||||||||||| || ||||||| || ||| |||||||||    
T  34373998 atcgagtagattaaagtgcttgatgtggtacttaagccgtgaggttctcctacatattggactagtcttttgcgttgggctcttctcatg-gcttaagtc 34373900  T
Q  343 ctaaca 348  Q
    ||||||    
T  34373899 ctaaca 34373894  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 270 - 348
Target Start/End: Original strand, 33446015 - 33446093
Alignment:
Q  270 gtacttaagccatgaggctctgccaccgaatggactagtcttttgggtcgggctctccttatgagcttaagtcctaaca 348  Q
    |||||||||| |||||| ||| ||||  |||| ||||||||||| ||| |||||||||  |||||||||| || |||||    
T  33446015 gtacttaagctatgaggttcttccacttaatgaactagtcttttaggttgggctctccgcatgagcttaaatcttaaca 33446093  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 271 - 315
Target Start/End: Original strand, 34074334 - 34074378
Alignment:
Q  271 tacttaagccatgaggctctgccaccgaatggactagtcttttgg 315  Q
    |||||||| ||||||||||| ||||| | ||||||||||||||||    
T  34074334 tacttaaggcatgaggctctcccacctattggactagtcttttgg 34074378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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