View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_6 (Length: 462)
Name: NF8081_low_6
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 5 - 444
Target Start/End: Original strand, 43466581 - 43467014
Alignment:
| Q |
5 |
tttggtgtttatccatggagatgcaaagctttggcatgcatgttacatgctcaacagaggcaaatgtgcagcaaatgaaggattctggctt-gaattttg |
103 |
Q |
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| T |
43466581 |
tttggtgtttatccatggagatgcaaagctttggcatgcatgttacatgctcaacagaggcaa-tgtgcagcaaatgaaggattctggctttgaattttg |
43466679 |
T |
|
| Q |
104 |
tcatgtacaatgtgacaatctacctcaatttgtatcgtgagtggaaaacatgattagaggcaatggcatgacagatttgttattactataaatgattata |
203 |
Q |
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| T |
43466680 |
tcatgtacaatgtgacaatctacctcaatttgtatcgtgagtggaaaacatgattagaggcaatggcatgacagatttgttattactataaatgattata |
43466779 |
T |
|
| Q |
204 |
gggtctgggtgtagaatttgaaagtcactcgagaggaaaagtagtcattgtgcctcacacttggctttcgcctcagcacgatacttggcttctgattacg |
303 |
Q |
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| T |
43466780 |
gggtctgggtgtagaatttgaaagtcactcgagaggaaaagtagtcattgtgcctcacacttagctttcgcctcagcacgatactcggcttctgattacg |
43466879 |
T |
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| Q |
304 |
atcttgagacaattgctctttccttattttcaaagaaaagagcaaaaatccatagtagacctacacctactagtatcctgacaagctcctcaatccgagt |
403 |
Q |
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| T |
43466880 |
atcttgagacaattgctctttccttattttcaaagaaaagagcaaaaatccatagtag------acctactagtatcctgacaagctcctcaatccgagt |
43466973 |
T |
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| Q |
404 |
cacaaaatcctttcaatgatgttgttgggaagctgtgaaag |
444 |
Q |
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| T |
43466974 |
cacaaaatcctttcaatgatgttgttgggaagctgtgaaag |
43467014 |
T |
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