View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_7 (Length: 460)
Name: NF8081_low_7
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_7 |
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Alignment Details
Target: chr4 (Bit Score: 404; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 404; E-Value: 0
Query Start/End: Original strand, 18 - 446
Target Start/End: Original strand, 4776784 - 4777212
Alignment:
| Q |
18 |
ttcttccaagttttgaaccatggagttagtcatgacttgatgaaacgtgctagggaagtttggcgtgagtcttttgaactaccacttgaggtgaaagagg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4776784 |
ttcttccaagttttgaaccatggagttagtcatgacttgatgaaacgtgctagggaagtttggcgtgagttttttgaactaccacttgaggtgaaagagg |
4776883 |
T |
|
| Q |
118 |
agtatgctaattctcctaccacttatgagggatatggaagtcgtttgggagtgaaaaaaggtgccattttggattggagtgactacttttttcttcatta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4776884 |
agtatgctaattctcctaccacttatgagggatatggaagtcgtttgggagtgaaaaaaggtgccattttggattggagtgactacttttttcttcatta |
4776983 |
T |
|
| Q |
218 |
catgccttgctcacttagggaccaaaccaagtggccttcccttccaacttctttaaggtactatatcacctaccaagcttatcnnnnnnnagcatatttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
4776984 |
catgccttgctcacttagggaccaaaccaagtggccttcccttccaacttctttaaggtactatatcacctaccaagcttatctttttttagcatatttc |
4777083 |
T |
|
| Q |
318 |
acatgtgattgattttcatacaatattgatgtaaaaagttttataagtgggtaaattacaacgaacatatgtgctaaagtcaaatattttcaacaatctg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4777084 |
acatgtgattgattttcatacaatattgatgtaaaaagttttataagtgggtaaattacaacgaacatatgtgctaaagtcaaatattttcaacaatctg |
4777183 |
T |
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| Q |
418 |
atagttataattgattgatagtttatatt |
446 |
Q |
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| T |
4777184 |
atagttataattgattgatagtttatatt |
4777212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 3e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 16 - 254
Target Start/End: Complemental strand, 25179472 - 25179234
Alignment:
| Q |
16 |
ggttcttccaagttttgaaccatggagttagtcatgacttgatgaaacgtgctagggaagtttggcgtgagtcttttgaactaccacttgaggtgaaaga |
115 |
Q |
| |
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||||||||||||| |||| ||||| |||||||||| |||||| || |||||| ||||||||||||||||| ||| | || |||||||| ||||| || |
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| T |
25179472 |
ggttcttccaagtggtgaatcatgggattagtcatgagttgatggaaagtgctaaggaagtttggcgtgagttctttaaccttccacttgaagtgaagga |
25179373 |
T |
|
| Q |
116 |
ggagtatgctaattctcctaccacttatgagggatatggaagtcgtttgggagtgaaaaaaggtgccattttggattggagtgactacttttttcttcat |
215 |
Q |
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|| | |||||| ||||||| ||||||||||| ||||| ||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
25179372 |
agaatttgctaactctcctagtacttatgagggttatggtagtaggttgggagtgaaaaaaggtgctattttggattggagtgactacttttttcttcat |
25179273 |
T |
|
| Q |
216 |
tacatgccttgctcacttagggaccaaaccaagtggcct |
254 |
Q |
| |
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| |||||| || |||||| ||||| | ||||||||| |
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| T |
25179272 |
tctatgcctccttctcttaggaaccaagctaagtggcct |
25179234 |
T |
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