View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8081_low_9 (Length: 418)
Name: NF8081_low_9
Description: NF8081
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8081_low_9 |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 13 - 404
Target Start/End: Original strand, 14748564 - 14748960
Alignment:
| Q |
13 |
aatatagtgttggtttgtatagttgtattttattttaagaaatactaaaattggtttttgaggttcttaaatattcatttcagctttcaaattagtcctc |
112 |
Q |
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| T |
14748564 |
aatatagtgttggtttgtatagttgtattttattttaagaaatactaaaattggtttttgaggttcttaaatattcatttcagctttcaaattagtcctc |
14748663 |
T |
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| Q |
113 |
gcattgtaaactttatacacaaaatacagcaaatttgactgctagattcatactaagaggccttgaatgtaacttcactctttcagtactacatgacctg |
212 |
Q |
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|||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
14748664 |
gcatcgtaaactttatacacaaattacagcaaatttgactgctagattcatactaagaggccttgaatgtaacttcactttttcagtactacatgacctg |
14748763 |
T |
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| Q |
213 |
gaccgtctcttaccaaaagccaaagctgtttattta---------ttcattttgtagtgtatagaattcaattgcaaatttctttagttttttggtgtgn |
303 |
Q |
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| T |
14748764 |
gaccgtctcttaccaaaagccaaagccgtttatttatttattttgttcattttgtagtgtatagacttcaattgcaaatttctttagttttttggtgtg- |
14748862 |
T |
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| Q |
304 |
nnnnnnnnnnnatcatttttatttagttgatgatggttatgcagaatgcacttctggaattttcaagggtgataagtgctaaagagcaagtggttgctgg |
403 |
Q |
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| T |
14748863 |
---ttttttttatcatttttatttagttgatgatggttatgcagaatgcacttctggaattttcaagggtgataagtgctaaagagcaagtggttgctgg |
14748959 |
T |
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