View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8082_high_2 (Length: 504)
Name: NF8082_high_2
Description: NF8082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8082_high_2 |
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| [»] scaffold0169 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 17 - 488
Target Start/End: Complemental strand, 19286617 - 19286147
Alignment:
| Q |
17 |
attctaaatatgttgtttgcaatgtatgtaatgtttgtaccttttgtagccaaggctatagaattggactttgctacaattatgcactatgttgtacttg |
116 |
Q |
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|||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |||| |||||||||||||||||||||||||||| |
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| T |
19286617 |
attctaaacatgttgttcgcaatgtatgtaatgtttgtaccttttgtagccaaggctatataattgaacttagctacaattatgcactatgttgtacttg |
19286518 |
T |
|
| Q |
117 |
tacttgtagaagaggacctagaataacagtccatcattcttccttcgttctgatgccacagtaagggggcggttttcactgtcacgcatgtaggtgtttt |
216 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||| |||| |||||||||||||||||||||||||||||||||||| |||| ||||||| |
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| T |
19286517 |
tacttgtagaagaggacctagaataacaatccatcattcttcctttgttccgatgccacagtaagggggcggttttcactgtcacgcctgtatgtgtttt |
19286418 |
T |
|
| Q |
217 |
tggtttgtttctgtgtttggtgcctgttgttgcttaagagccttttagtgctcttttagtttttggttcagctggttttttagctttctatgtatttctc |
316 |
Q |
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| T |
19286417 |
tgttctgtttttgtgtttggtgcctgctgttgcttaagag-cttttagtgctcttttagtttttggttcagctggttttttagctttctatgtattgctc |
19286319 |
T |
|
| Q |
317 |
cttgcccctgttggtacttcttgtgcccaggacgtgttataatatatgctgaattcaagaaaattgcacnnnnnnncgatgtttgttttttatgcagggt |
416 |
Q |
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| T |
19286318 |
cttgcctctgtttgtacttcttgtgctcaggacatgttataatatatgctgaattcaagaaaattgcacaaaaaaatgatgtttgttttttatgcagggt |
19286219 |
T |
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| Q |
417 |
tttgatggtgcattgaagttgtactgggtattacagctgatggatctgttgtgatctctgatgagcttaatg |
488 |
Q |
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| T |
19286218 |
tttgatgatgcattgaagttgtactggctattacaggtgatggatctgttgtgatctctgatgatcttaatg |
19286147 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0169 (Bit Score: 143; Significance: 7e-75; HSPs: 1)
Name: scaffold0169
Description:
Target: scaffold0169; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 253 - 488
Target Start/End: Original strand, 27801 - 28033
Alignment:
| Q |
253 |
agagccttttagtgctctttt-agtttttggttcagctggttttttagctttctatgtatttctccttgcccctgttggtacttcttgtgcccaggacgt |
351 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||| ||||||| |
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| T |
27801 |
agagccttttagtgctctttttagtttttggttcagctggttttttaactttctat----tgctccttgcccctgttggtacttcttgtgcctaggacgt |
27896 |
T |
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| Q |
352 |
gttataatatatgctgaattcaagaaaattgcacnnnnnnncgatgtttgttttttatgcagggttttgatggtgcattgaagttgtactgggtattaca |
451 |
Q |
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| T |
27897 |
gttataatatatgccgaattcaagaaaattgcacaaaaaaatgatgtttgttttttatgcagggttttaatcgtgcattgaagttgtactgggtattgaa |
27996 |
T |
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| Q |
452 |
gctgatggatctgttgtgatctctgatgagcttaatg |
488 |
Q |
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| T |
27997 |
ggtgatggatctgttgtgatctttgatgatcttaatg |
28033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 68; Significance: 4e-30; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 33569196 - 33569291
Alignment:
| Q |
394 |
gatgtttgttttttatgcagggttttgatggtgcattgaagttgtact-gggtattacagctgatggatctgttgtgatctctgatgagcttaatg |
488 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||| | ||||||| ||||||||||||||||||||||||||||||| ||||||| |
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| T |
33569196 |
gatgtttgttttttatgcagggttctgatggtggattgaagttgtattggggtattgcagctgatggatctgttgtgatctctgatgatcttaatg |
33569291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 53 - 119
Target Start/End: Original strand, 34241806 - 34241872
Alignment:
| Q |
53 |
gtaccttttgtagccaaggctatagaattggactttgctacaattatgcactatgttgtacttgtac |
119 |
Q |
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| T |
34241806 |
gtaccttttgtagccaaggctatagaactggacttggctacaattatgcactgtgttgtacttgtac |
34241872 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 175
Target Start/End: Original strand, 40929063 - 40929115
Alignment:
| Q |
123 |
tagaagaggacctagaataacagtccatcattcttccttcgttctgatgccac |
175 |
Q |
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| T |
40929063 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccac |
40929115 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 56; Significance: 5e-23; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 5946362 - 5946457
Alignment:
| Q |
394 |
gatgtttgttttttatgcagggttttgatggtgcattgaagttgtact-gggtattacagctgatggatctgttgtgatctctgatgagcttaatg |
488 |
Q |
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|||||||||||||||||||||||| |||||||| |||||||||||||| |||||| ||| |||||||||||||||||||| ||||| ||||||| |
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| T |
5946362 |
gatgtttgttttttatgcagggttctgatggtggattgaagttgtactaaggtattgcaggcgatggatctgttgtgatctcggatgatcttaatg |
5946457 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 394 - 488
Target Start/End: Original strand, 19026031 - 19026126
Alignment:
| Q |
394 |
gatgtttgttttttatgcagggttttgatggtgcattgaagttgtact-gggtattacagctgatggatctgttgtgatctctgatgagcttaatg |
488 |
Q |
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|||||||||||||||||||||||| ||| ||| ||||||| |||||| ||||||| || |||||||||||||||||||| ||||| ||||||| |
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| T |
19026031 |
gatgtttgttttttatgcagggttctgacagtggattgaagctgtactagggtattgtaggcgatggatctgttgtgatctcggatgatcttaatg |
19026126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 123 - 175
Target Start/End: Complemental strand, 48504702 - 48504650
Alignment:
| Q |
123 |
tagaagaggacctagaataacagtccatcattcttccttcgttctgatgccac |
175 |
Q |
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| T |
48504702 |
tagaagaggacctaaactcacaatccatcattcatcctttgttctgatgccac |
48504650 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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