View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8082_low_2 (Length: 599)
Name: NF8082_low_2
Description: NF8082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8082_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 545; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 9 - 581
Target Start/End: Original strand, 11359125 - 11359697
Alignment:
| Q |
9 |
gaagaatatattcaatgcttagcaccaacttatgttgcaacaacacttggtatatgtttggattgacagtgaacttcgcaaaataagagtggcaccacaa |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |
|
|
| T |
11359125 |
gaagaatatattcaatgcttagcaccaacttatgttgcaacaacacttggtatatgtttggattgacagtgaactttgcaaaataagagtggcaccgcaa |
11359224 |
T |
|
| Q |
109 |
tttggtaagctccaaagagcagtagcttttgcaaaatatacattgtttcaccaatgattatgtcaacctcaccatcaatccaaacatgcacgaatcaaag |
208 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
11359225 |
tttggtaagctccaaagagtagtagcttttgcaaaatatacattgtttcaccaatgattatgtcaacctcaccatcaatccaaacatgtacgaatcaaag |
11359324 |
T |
|
| Q |
209 |
gcatgtcgtggtgtctaacagtgacacatataattacattcaatcaacgacgctcgtataagtaccaatgccgtgcttaaaaacatgcgcctacatattc |
308 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11359325 |
gcatgtcgtggtgtctgacagtgacacatataattacattcaatcaacgacgctcgtataagtaccaatgccgtgcttaaaaacatgcgcctacatattc |
11359424 |
T |
|
| Q |
309 |
atgattacattaggttagatgatttagtattacctccccccatatatgaaatttgatacacttcacttgactgaattgtttaacaaggagacaagcacct |
408 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | |
|
|
| T |
11359425 |
atgattacattaggttagatgatttagtattacctccccccatatatgaaatttgatacacttcacttgactgaattgtttaagaaggagacaagcactt |
11359524 |
T |
|
| Q |
409 |
gatccaatttctcgatcaacaatactcccacgcttatagataatgatgttaacataagcatcataagctactgatggattcgacaaaacaatgggttgca |
508 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11359525 |
gatccaatttctcgatcaacaatactcccacgcttatagataatgatgttaacataagcatcataagctactgatggattcgacaaaacaatgggttgca |
11359624 |
T |
|
| Q |
509 |
ttatgccatcatgaccacaataagtgaattctttcaaacatgaagcagaaaatttgattttgcagctacgtag |
581 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11359625 |
ttatgccatcatgaccacaataagtgaattctttcaaacatgaagcagaaaatttgattttgcagctacgtag |
11359697 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 523 - 579
Target Start/End: Complemental strand, 30723963 - 30723907
Alignment:
| Q |
523 |
ccacaataagtgaattctttcaaacatgaagcagaaaatttgattttgcagctacgt |
579 |
Q |
| |
|
|||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |
|
|
| T |
30723963 |
ccacgataagtgaattctttcatacacgaagcagaaaacttgattttgcagctacgt |
30723907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 523 - 579
Target Start/End: Complemental strand, 30716265 - 30716209
Alignment:
| Q |
523 |
ccacaataagtgaattctttcaaacatgaagcagaaaatttgattttgcagctacgt |
579 |
Q |
| |
|
|||||||||||||||||||||| | |||| |||||||||||||||||||| ||||| |
|
|
| T |
30716265 |
ccacaataagtgaattctttcaggcttgaatcagaaaatttgattttgcagttacgt |
30716209 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 354 - 405
Target Start/End: Complemental strand, 30716428 - 30716377
Alignment:
| Q |
354 |
atgaaatttgatacacttcacttgactgaattgtttaacaaggagacaagca |
405 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| || | ||||||||||||| |
|
|
| T |
30716428 |
atgaaatttcatacacttcacttgactgaattgattgagaaggagacaagca |
30716377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 354 - 420
Target Start/End: Complemental strand, 30709936 - 30709870
Alignment:
| Q |
354 |
atgaaatttgatacacttcacttgactgaattgtttaacaaggagacaagcacctgatccaatttct |
420 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| ||| | |||||||||| || ||||||| ||||| |
|
|
| T |
30709936 |
atgaaatttgatacacttaacttgactgaattctttgagaaggagacaaacatttgatccagtttct |
30709870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 357 - 406
Target Start/End: Complemental strand, 30724126 - 30724077
Alignment:
| Q |
357 |
aaatttgatacacttcacttgactgaattgtttaacaaggagacaagcac |
406 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| | ||| ||| |||||| |
|
|
| T |
30724126 |
aaattggatacacttcacttgactgaattgtttgagaagtagagaagcac |
30724077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 199
Target Start/End: Complemental strand, 18639759 - 18639723
Alignment:
| Q |
163 |
tgattatgtcaacctcaccatcaatccaaacatgcac |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
18639759 |
tgattatgtcaatctcaccatcaatccagacatgcac |
18639723 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 163 - 199
Target Start/End: Original strand, 1837613 - 1837649
Alignment:
| Q |
163 |
tgattatgtcaacctcaccatcaatccaaacatgcac |
199 |
Q |
| |
|
|||||||||||| ||||||||||||||| |||||||| |
|
|
| T |
1837613 |
tgattatgtcaatctcaccatcaatccagacatgcac |
1837649 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University