View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8082_low_7 (Length: 353)

Name: NF8082_low_7
Description: NF8082
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8082_low_7
NF8082_low_7
[»] chr4 (16 HSPs)
chr4 (1-336)||(3800545-3800880)
chr4 (93-334)||(4001253-4001495)
chr4 (4-274)||(4009029-4009285)
chr4 (93-336)||(4217576-4217829)
chr4 (1-336)||(3956320-3956641)
chr4 (91-336)||(3985945-3986199)
chr4 (139-268)||(3920704-3920833)
chr4 (139-252)||(3933925-3934038)
chr4 (1-279)||(4024247-4024524)
chr4 (290-336)||(4024145-4024191)
chr4 (8-77)||(3816815-3816884)
chr4 (9-184)||(3809124-3809297)
chr4 (8-96)||(3933804-3933892)
chr4 (45-96)||(3920620-3920671)
chr4 (47-77)||(4001522-4001552)
chr4 (215-268)||(3809046-3809099)
[»] chr5 (1 HSPs)
chr5 (1-336)||(13396919-13397239)


Alignment Details
Target: chr4 (Bit Score: 312; Significance: 1e-176; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 3800880 - 3800545
Alignment:
Q  1 gaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800880 gaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatg 3800781  T
Q  101 ttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800780 ttattttggttaaaaatatggctttcaatgattgaaatttttcttttacgttaatggtagggtactgatgctattagaagcatacgtgtagacttgtcat 3800681  T
Q  201 catttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacgatttggaacttcttcctca 300  Q
    |||||||| || || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  3800680 catttaggaagctgaagttaagccctcatgtatttgctaagatgaccaacttgcgatatttggattttcatggtaaatacgatttggaacttcttcctca 3800581  T
Q  301 agggcttcaattttttccaaatgatctaagatatct 336  Q
    ||||||||||| ||||||||||||||||||||||||    
T  3800580 agggcttcaatcttttccaaatgatctaagatatct 3800545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 93 - 334
Target Start/End: Complemental strand, 4001495 - 4001253
Alignment:
Q  93 aacatatgttattttggttaaaaatatggctttcaatgatt-gaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtag 191  Q
    ||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4001495 aacatatgtcattttggttaaaaatatggctttcaatgatttgtaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtag 4001396  T
Q  192 acttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacgatttggaact 291  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||    
T  4001395 acttgtcatcatttaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttcattggtaaatacgatttggaact 4001296  T
Q  292 tcttcctcaagggcttcaattttttccaaatgatctaagatat 334  Q
    |||||||||||||||||||| ||| |||| |||||||||||||    
T  4001295 tcttcctcaagggcttcaatctttcccaactgatctaagatat 4001253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 4009285 - 4009029
Alignment:
Q  4 cctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatgtta 103  Q
    |||| ||||||||||||  ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||||| ||| |    
T  4009285 cctataaaatgcagtcaactatgggatcctgatattatctatgatgtattgaaaaacgacaaggtaaaatatatttggcaattttagataacatttgtca 4009186  T
Q  104 ttttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcatcat 203  Q
    ||||||| |||| |||            ||||   ||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||| |      
T  4009185 ttttggtaaaaagtatt-----------ttga---ttttcttttacattaatggcagggcactgatgttattagaagcatacgtgtagacttgtcagcga 4009100  T
Q  204 ttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggt 274  Q
    | ||| || || ||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||    
T  4009099 tcaggaagctgaagttaagccctcatgtatttgctaagatgaccaacctgctatttttggattttcatggt 4009029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 93 - 336
Target Start/End: Complemental strand, 4217829 - 4217576
Alignment:
Q  93 aacatatgttattttggttaaaaatatggctttcaatgatt-gaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtag 191  Q
    ||||||||| |||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4217829 aacatatgtcattttggttacaaatttggctttcaatgatttgtaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtaa 4217730  T
Q  192 acttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacga--------- 282  Q
    ||||||||||| || ||  | || ||||||||||||||||||||||||||||||||||||||  || |||| |||||  ||||   |||||             
T  4217729 acttgtcatcagtttggatgctgaagttaagccctcatgtatttgctaagatgaccaacctgaaatttttgaatttttttggtgggtacgataatgactg 4217630  T
Q  283 tttggaacttcttcctcaagggcttcaattttttccaaatgatctaagatatct 336  Q
    |||||| |||||||||| ||||||||||| ||||||||||||||||||||||||    
T  4217629 tttggatcttcttcctcgagggcttcaatcttttccaaatgatctaagatatct 4217576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 1 - 336
Target Start/End: Original strand, 3956320 - 3956641
Alignment:
Q  1 gaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatg 100  Q
    |||||||||||||||||||  ||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||    
T  3956320 gaccctagaaaatgcagtcgattatccaatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggcaattttagataacatttg 3956419  T
Q  101 ttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcat 200  Q
    |  || |||| ||||||||   ||| |           ||||||||||||||||||  |||||||||||||||||||||||||| || |||||||||||     
T  3956420 tctttctggtgaaaaatat---tttga-----------ttttcttttacattaatgacagggtactgatgctattagaagcataagtctagacttgtcag 3956505  T
Q  201 catttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacgatttggaacttcttcctca 300  Q
    ||  |||| |  || ||||||||||  ||||||||| |||||||||||||||||  | ||||||||||| ||  | | | | |||||| | | ||||| |    
T  3956506 caagtaggaaactgaagttaagccccaatgtatttgataagatgaccaacctgcagtttttggattttcgtgacatagatggtttggatcgtattcctga 3956605  T
Q  301 agggcttcaattttttccaaatgatctaagatatct 336  Q
    |||| |||||| |||||||| |||||||| ||||||    
T  3956606 agggattcaatcttttccaactgatctaaaatatct 3956641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 91 - 336
Target Start/End: Complemental strand, 3986199 - 3985945
Alignment:
Q  91 ataacatatgttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgta 190  Q
    ||||||| ||||||||||||| ||||| || |||||||||||| | | ||||||||| |||| |||  |||||||||||||||||||||||||| || ||    
T  3986199 ataacatttgttattttggtttaaaatgtgtctttcaatgatttagaattttcttttccattcatgacagggtactgatgctattagaagcatatgtcta 3986100  T
Q  191 gacttgtcatcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacga-------- 282  Q
     |||||||| || ||||| || || ||||||||||| ||||||||||||||||||| ||||||  || |||||||||| |||||   ||| |            
T  3986099 aacttgtcagcaattaggaagctgaagttaagccctgatgtatttgctaagatgacgaacctgaaatttttggatttttatggtgggtacaatcatgatt 3986000  T
Q  283 -tttggaacttcttcctcaagggcttcaattttttccaaatgatctaagatatct 336  Q
     |||||| |||||||||||||||||||||  |||||||| |||||||||||||||    
T  3985999 gtttggatcttcttcctcaagggcttcaaccttttccaactgatctaagatatct 3985945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 268
Target Start/End: Original strand, 3920704 - 3920833
Alignment:
Q  139 ttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgct 238  Q
    ||||||||||||||||||| ||||| |||||||||| ||||||||||||||| |||| | |  |  |||| || |  ||||||||||||||||||||| |    
T  3920704 ttttcttttacattaatggcagggttctgatgctatcagaagcatacgtgtaaacttcttagaaaataggaagctaaagttaagccctcatgtatttgat 3920803  T
Q  239 aagatgaccaacctgcgatatttggatttt 268  Q
    |||||||||||||| | || ||||||||||    
T  3920804 aagatgaccaacctccaatttttggatttt 3920833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 139 - 252
Target Start/End: Original strand, 3933925 - 3934038
Alignment:
Q  139 ttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcatcatttagggagttggagttaagccctcatgtatttgct 238  Q
    ||||||||||||||||||| ||||| |||||||||| |||||||||||||||||||| | |  |  |||| || |  ||||||||||||||||||||| |    
T  3933925 ttttcttttacattaatggcagggttctgatgctatcagaagcatacgtgtagacttcttagaaaataggaagctaaagttaagccctcatgtatttgat 3934024  T
Q  239 aagatgaccaacct 252  Q
    ||||||||||||||    
T  3934025 aagatgaccaacct 3934038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 279
Target Start/End: Complemental strand, 4024524 - 4024247
Alignment:
Q  1 gaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatg 100  Q
    |||||||||||| ||||||  |||||||||| ||||   || | |||||||||| |||||||||||||||| |  ||  |  | ||| |||  || | ||    
T  4024524 gaccctagaaaacgcagtcgattatgggatcatgatgacatttgtgatgtattggaaaatgacaaggtaaacataatacgtattttt-agacgacgtttg 4024426  T
Q  101 ttattttggttaaaaatatggctttcaatgattg-aaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtca 199  Q
    | ||||||| |||||||| |||||| | | |||  |||||||||| ||||||| |||  |||||||||||| ||||||||||||| ||||||||||||||    
T  4024425 tcattttggctaaaaatacggctttaactaattttaaatttttctcttacattcatgc-agggtactgatgttattagaagcataagtgtagacttgtca 4024327  T
Q  200 tcatttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaata 279  Q
      |   ||  || ||  ||||||| |||||| ||||||||||||||||||||||| || ||||||||||| |||| ||||    
T  4024326 ggaagaagaaagctgatgttaagctctcatgcatttgctaagatgaccaacctgcaatttttggattttcgtggtgaata 4024247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 290 - 336
Target Start/End: Complemental strand, 4024191 - 4024145
Alignment:
Q  290 cttcttcctcaagggcttcaattttttccaaatgatctaagatatct 336  Q
    |||||||||||||||||||||| |||||||| |||||||||||||||    
T  4024191 cttcttcctcaagggcttcaatcttttccaactgatctaagatatct 4024145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 77
Target Start/End: Complemental strand, 3816884 - 3816815
Alignment:
Q  8 gaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatat 77  Q
    ||||| ||||||  |||||| ||||||||   || |||||||||||||||||||||||||||||||||||    
T  3816884 gaaaacgcagtcgattatggaatcctgatgaaatttatgatgtattgaaaaatgacaaggtaaaaaatat 3816815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 9 - 184
Target Start/End: Complemental strand, 3809297 - 3809124
Alignment:
Q  9 aaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatgttattttg 108  Q
    |||| ||||||  |||||| ||||||||   || ||||||||||||||||||||||||||||||| ||  || |  ||| ||||||||| ||| || ||     
T  3809297 aaaacgcagtcgattatggaatcctgatgaaatttatgatgtattgaaaaatgacaaggtaaaaagta--tgtcatttttagataacatttgtcatgtt- 3809201  T
Q  109 gttaaaaatatggctttcaatgattgaaat-ttttcttttacattaatggtagggtactgatgctattagaagcata 184  Q
    ||||||||  || ||||||| ||||  ||| |||| |||||| || |||  ||||||||||| |||| |||||||||    
T  3809200 gttaaaaaggtgcctttcaaagattttaatgttttattttactttcatgacagggtactgattctataagaagcata 3809124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 96
Target Start/End: Original strand, 3933804 - 3933892
Alignment:
Q  8 gaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataaca 96  Q
    ||||||||||||  |||||||||  ||||   || | ||||||||||||||||||||||||||| | ||| ||||  ||||||||||||    
T  3933804 gaaaatgcagtcgattatgggatgttgatgacatttttgatgtattgaaaaatgacaaggtaaacattatatggcattttcagataaca 3933892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 45 - 96
Target Start/End: Original strand, 3920620 - 3920671
Alignment:
Q  45 tgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataaca 96  Q
    ||||||||||||||||||||||||||| | ||| ||||  ||||||||||||    
T  3920620 tgatgtattgaaaaatgacaaggtaaacattatatggcattttcagataaca 3920671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 77
Target Start/End: Complemental strand, 4001552 - 4001522
Alignment:
Q  47 atgtattgaaaaatgacaaggtaaaaaatat 77  Q
    |||||||||||||||||||||||||||||||    
T  4001552 atgtattgaaaaatgacaaggtaaaaaatat 4001522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 215 - 268
Target Start/End: Complemental strand, 3809099 - 3809046
Alignment:
Q  215 gagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggatttt 268  Q
    ||||||||||||| |||||||| |||||||||||| || |||| |||| |||||    
T  3809099 gagttaagccctcgtgtatttgataagatgaccaaacttcgatttttgtatttt 3809046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 1 - 336
Target Start/End: Complemental strand, 13397239 - 13396919
Alignment:
Q  1 gaccctagaaaatgcagtcatttatgggatcctgatattatctatgatgtattgaaaaatgacaaggtaaaaaatatttggctatttcagataacatatg 100  Q
    |||||||||||||||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||| |||| ||||||||| ||    
T  13397239 gaccctagaaaatgcagtcgattatgggatcctgatattatctacgatgtattgaaaaatgacaaggtaaaaaa-atttggcaattttagataacatttg 13397141  T
Q  101 ttattttggttaaaaatatggctttcaatgattgaaatttttcttttacattaatggtagggtactgatgctattagaagcatacgtgtagacttgtcat 200  Q
    | |||||||| ||||||||            ||||   |||||||||| | |||||  |||||||||||||||||||||||||| ||||||||||||||     
T  13397140 tcattttggtaaaaaatatt-----------ttga---ttttcttttataataatgacagggtactgatgctattagaagcataagtgtagacttgtcag 13397055  T
Q  201 catttagggagttggagttaagccctcatgtatttgctaagatgaccaacctgcgatatttggattttcatggtaaatacgatttggaacttcttcctca 300  Q
    || ||||| || || |||||||||| | |||||||| ||||||||||||||||  || |||| ||||||||| || | ||| |||||| | |||||||||    
T  13397054 caattaggaagctgaagttaagcccgcctgtatttgataagatgaccaacctgaaatttttgtattttcatgatatagacggtttggatcgtcttcctca 13396955  T
Q  301 agggcttcaattttttccaaatgatctaagatatct 336  Q
    |||||||||||||||||||| |||||||||||||||    
T  13396954 agggcttcaattttttccaactgatctaagatatct 13396919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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