View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8083_high_1 (Length: 359)
Name: NF8083_high_1
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 143; Significance: 5e-75; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 9 - 155
Target Start/End: Original strand, 13827375 - 13827521
Alignment:
| Q |
9 |
tcgtgtttccgaatgaagctttacagtcacaatgcactcatttatattgcaaaccatgtttgacgtatgtcgtcggtaccaccagggcgtgtccttatga |
108 |
Q |
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| T |
13827375 |
tcgtgtttccgaatgaagctttgcagtcacaatgcactcatttatattgcaaaccatgtttgacgtatgtcgtcggtaccaccagggcgtgtccttatga |
13827474 |
T |
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| Q |
109 |
tggttatttggtcaccgaggccgattcaaaggttcgaatgtagttat |
155 |
Q |
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| T |
13827475 |
tggttatttggtcaccgaggccgattcaaaggttcgaatgtagttat |
13827521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 106; E-Value: 6e-53
Query Start/End: Original strand, 238 - 358
Target Start/End: Original strand, 13827604 - 13827725
Alignment:
| Q |
238 |
cagccgttgattgagtcgaataagacattggcggaaacgattgggaaaatagcagttcattgtttgtatcataggagtggatgttcatggcaaggaactt |
337 |
Q |
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| T |
13827604 |
cagccgttgattgagtcgaataagacattggcggaaacgattgggaaaatagctgttcattgtttgtatcataggagtggatgttcatggcaaggaactt |
13827703 |
T |
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| Q |
338 |
tgtctga-tgtccatctcattg |
358 |
Q |
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| T |
13827704 |
tgtctgattgtacatctcattg |
13827725 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 243 - 340
Target Start/End: Original strand, 15497745 - 15497842
Alignment:
| Q |
243 |
gttgattgagtcgaataagacattggcggaaacgattgggaaaatagcagttcattgtttgtatcataggagtggatgttcatggcaaggaactttgt |
340 |
Q |
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| T |
15497745 |
gttgattgagtcgaataagtcattggcggaaactatttggaaaatagaggttcgttgtttgtgtcgtaggagtggatgctcgtggcaaggaactttgt |
15497842 |
T |
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