View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8083_high_2 (Length: 351)
Name: NF8083_high_2
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_high_2 |
 | |
|
| [»] chr2 (21 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
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|
Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 21)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 20 - 351
Target Start/End: Original strand, 39602224 - 39602556
Alignment:
| Q |
20 |
gaacttaatcaagtcaagggcaacatttcaaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaactca |
119 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39602224 |
gaacttaatcaagtcaagggcaacatttcaaaagaaatagaacttcgtcgagtcattgataacattgataaggaccgtgaaaggaaggaagaggaactca |
39602323 |
T |
|
| Q |
120 |
aggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtaggcaagcagaaaa |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
39602324 |
aggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtgggcaagcagaaaa |
39602423 |
T |
|
| Q |
220 |
attagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcgagtcaat-aagaagcaacttgaa |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39602424 |
attagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcgagtcaataaagaagcaacttgaa |
39602523 |
T |
|
| Q |
319 |
ggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
39602524 |
ggtcaggtcaaggaacttgagtcaaaagagaag |
39602556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 39450730 - 39450977
Alignment:
| Q |
18 |
tagaacttaatcaagtcaagggcaacatttcaaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaact |
117 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
39450730 |
tagaacttaatcaagtcaaggggaacatttcaaaagaaatagaacttcgtcaagtcattgttaacattgataaggaccgtgaaaggaaggaagaggaact |
39450829 |
T |
|
| Q |
118 |
caaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtaggcaagcagaa |
217 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| || |||||||||||||||||| ||||||||| |||||| | ||||||| | ||||| ||| |
|
|
| T |
39450830 |
caaggctctttcccaaaaaaatgctgaatttacttttaaatgtaaggccaaagagatagaacttgatgcattgaacaaactaattggcaaacaagctgaa |
39450929 |
T |
|
| Q |
218 |
aaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaag |
265 |
Q |
| |
|
||||||||||| ||| ||| |||||||| ||| |||| || |||||| |
|
|
| T |
39450930 |
aaattagagtctgaaaagaacaagttgctgaaggtaacctccgaaaag |
39450977 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 18 - 350
Target Start/End: Original strand, 39220393 - 39220726
Alignment:
| Q |
18 |
tagaacttaatcaagtcaagggcaacatttcaaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaact |
117 |
Q |
| |
|
|||||||| ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||| | |
|
|
| T |
39220393 |
tagaacttgatcaagtcaagggtaacatttcaaaagaaatagaacttcgtcaagtcattgataacattgataaggaccatgaaaggaaggaagaggaaat |
39220492 |
T |
|
| Q |
118 |
caaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtaggcaagcagaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||| || ||||||| |||||||||||||| |||||||||||| |||||| |||||||||| ||||||||| |
|
|
| T |
39220493 |
caaggctctttcccaaaaaattgctgaacttgctttggactgtaaggccaaagagaacgagcttgatgcagtgaacaaattaattggtgaacaagcagaa |
39220592 |
T |
|
| Q |
218 |
aaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcgagtc-aataagaagcaacttg |
316 |
Q |
| |
|
|| ||||| || ||||||||||| ||| ||| |||||||| | ||||| || |||||| || |||||||| ||||| || |||||| | ||| |
|
|
| T |
39220593 |
aagttagaatctgaaaggaagaaggcaagaaatataatatcagaaatgaagaatagtattgctcagatgaaggaatttgagtcaaagcagaagcgatttg |
39220692 |
T |
|
| Q |
317 |
aaggtcaggtcaaggaacttgagtcaaaagagaa |
350 |
Q |
| |
|
| | || | | ||||||||||||||||||||||| |
|
|
| T |
39220693 |
atgatcggtttaaggaacttgagtcaaaagagaa |
39220726 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 70 - 228
Target Start/End: Complemental strand, 39382041 - 39381883
Alignment:
| Q |
70 |
agtcattgataacattgataaagaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaa |
169 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||| |
|
|
| T |
39382041 |
agtcattgataacattgataaggaccgtgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaatttattttggaacttaaggccaaa |
39381942 |
T |
|
| Q |
170 |
gagatagagcttgatgcaatgaacagattaattggtaggcaagcagaaaaattagagtc |
228 |
Q |
| |
|
||||||||||||||| ||||||||| |||||||| | ||||| |||||||||||||| |
|
|
| T |
39381941 |
gagatagagcttgatacaatgaacaagttaattggcacacaagcggaaaaattagagtc |
39381883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 50 - 351
Target Start/End: Complemental strand, 39199330 - 39199028
Alignment:
| Q |
50 |
aaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaattta |
149 |
Q |
| |
|
||||| ||||||||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
39199330 |
aaagagatagaacttaatcaagtcattgataacattgataaggaccgtgaaaggaaggaagaggaactcaaggctctttcccaacaaattgctgaattta |
39199231 |
T |
|
| Q |
150 |
ctttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaa |
249 |
Q |
| |
|
|||||||| |||||||||| ||| |||||||| |||| |||||| |||||||||| || || ||||| ||||| || |||||||||| |||||| |
|
|
| T |
39199230 |
ctttggaatataaggccaaacagaaagagcttggtgcagtgaacaaattaattggtgaacaggcggaaaagttagaatctggaaggaagaaggcgctaaa |
39199131 |
T |
|
| Q |
250 |
gctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcgagtc-aataagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagag |
348 |
Q |
| |
|
||| |||||||| | ||||| || ||||||| | |||||||| || || || |||||| | |||| | || ||| |||||| | |||||||||||| |
|
|
| T |
39199130 |
tataatatcagaaatgaagaatagtattgctcaagtgaaggaatttgaatcaaagcagaagcgatttgatgatcgggttaaggaaatcgagtcaaaagag |
39199031 |
T |
|
| Q |
349 |
aag |
351 |
Q |
| |
|
||| |
|
|
| T |
39199030 |
aag |
39199028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 62 - 205
Target Start/End: Original strand, 39369526 - 39369669
Alignment:
| Q |
62 |
cttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaactta |
161 |
Q |
| |
|
||||||| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||| |
|
|
| T |
39369526 |
cttcgtcaagtcattgataacattgataaggtccatgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaaattactgtggaattta |
39369625 |
T |
|
| Q |
162 |
aggccaaagagatagagcttgatgcaatgaacagattaattggt |
205 |
Q |
| |
|
||||||||||||||||||||||||| |||| | ||||||||| |
|
|
| T |
39369626 |
tggccaaagagatagagcttgatgcagtgaataacttaattggt |
39369669 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 103 - 351
Target Start/End: Complemental strand, 39391608 - 39391359
Alignment:
| Q |
103 |
gaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaatt |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||| ||||| |||| |||||||| |||||||||||| ||| |||||||||| |||| ||||||| |
|
|
| T |
39391608 |
gaaggaagaggaactgaaggctctttcccaaaaaattgttgaatgtactgtggaacttcaggccaaagagaaagatcttgatgcaacaaacaaattaatt |
39391509 |
T |
|
| Q |
203 |
ggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcgagtc-a |
301 |
Q |
| |
|
||| ||||||||||||||||||| | || |||||| | | |||| ||| |||||||| | ||||| | |||||| ||| ||||| || ||||| | |
|
|
| T |
39391508 |
ggtgaagaagcagaaaaattagagtctacaaagaagaaatcgataaatataatatcagaaatgaagaatagctgtgctctaatgaaggactttgagtcaa |
39391409 |
T |
|
| Q |
302 |
ataagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
| |||||||| || |||| | ||| |||||||||||||||||||||||| |
|
|
| T |
39391408 |
agcagaagcaatttaaaggccgggttaaggaacttgagtcaaaagagaag |
39391359 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 18 - 243
Target Start/End: Complemental strand, 44896207 - 44895991
Alignment:
| Q |
18 |
tagaacttaatcaagtcaagggcaacatttcaaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaact |
117 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| |||| | ||| |||||||||||| || |||||||||||||||||| |||| |
|
|
| T |
44896207 |
tagaacttaatcaagtaaagggtaacatttctaaagaaattgaacgttgtcaagtcattgataag---------gatcgtgaaaggaaggaagagcaact |
44896117 |
T |
|
| Q |
118 |
caaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtaggcaagcagaa |
217 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||| |||||||| ||| | | || | |||| | |||||||| | |
|
|
| T |
44896116 |
caaggctctttcccaaaaaattgatgaatgtactatggaacttaaggccaaagagaaagaccttgatgctatggagaaatcagttggcatgcaagcagca |
44896017 |
T |
|
| Q |
218 |
aaattagagtccaaaaggaagaagtt |
243 |
Q |
| |
|
|| ||| |||| ||||||||||||| |
|
|
| T |
44896016 |
aagttacagtcggaaaggaagaagtt |
44895991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 97 - 351
Target Start/End: Complemental strand, 39398952 - 39398694
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||| |||| |||| || | ||||||| || ||||||||| |||||||||||||||||| | | |
|
|
| T |
39398952 |
tgaaaggaaggaagaggaactcaaggctcttgcccaaaaagttgccgaatgtaatatggaactagagtccaaagagaaagagcttgatgcaatgaaaata |
39398853 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggt---cgtgctcaaataaaggaat |
293 |
Q |
| |
|
||| || | | |||||||||| |||||||| ||||||||||||| |||||| ||| ||| | | |||||| | ||||||||||| | || | |
|
|
| T |
39398852 |
ttagttagcggacaagcagaaattttagagtcggaaaggaagaagttactaaaggtaatgtcaatcaggcagaatgatccacgtgctcaaatggaagact |
39398753 |
T |
|
| Q |
294 |
tcgagtcaat-aagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
|||||||||| |||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39398752 |
tcgagtcaatgaagaagtgttttgaaggtcaggttaaggaacttgagtcaaaagagaag |
39398694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 48 - 192
Target Start/End: Complemental strand, 39495393 - 39495249
Alignment:
| Q |
48 |
caaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatt |
147 |
Q |
| |
|
||||||||| ||||||||||| |||||| |||||| |||||| | | ||||| |||||||| |||||||||| ||||||||||||||||||||| ||| |
|
|
| T |
39495393 |
caaaagaaacagaacttcgtccagtcatggataacggtgataaggtctgtgaagggaaggaacaggaactcaaagctctttcccaaaaaattgctcaatg |
39495294 |
T |
|
| Q |
148 |
tactttggaacttaaggccaaagagatagagcttgatgcaatgaa |
192 |
Q |
| |
|
| || ||||||||||||||||||||| |||| |||| ||||||| |
|
|
| T |
39495293 |
ttctgtggaacttaaggccaaagagaaagagtgtgatacaatgaa |
39495249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 48 - 243
Target Start/End: Original strand, 39129705 - 39129900
Alignment:
| Q |
48 |
caaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatt |
147 |
Q |
| |
|
||||||||| | ||||||||| | |||| |||||||||||||| | |||||||||| || |||||||||||| |||||||||||| |||||| | | |
|
|
| T |
39129705 |
caaaagaaacaaaacttcgtccactcatggataacattgataatatctatgaaaggaagaaacaggaactcaaggatctttcccaaaatattgctcagtg |
39129804 |
T |
|
| Q |
148 |
tactttggaacttaaggccaaagagatagagcttgatgcaatgaacagattaattggtaggcaagcagaaaaattagagtccaaaaggaagaagtt |
243 |
Q |
| |
|
|||| ||||||| ||| |||||||| ||||| |||||||||||| | |||||||| || |||||||||| | ||||||| ||||||||||||| |
|
|
| T |
39129805 |
tactgtggaactcaagagcaaagagaaagagcgtgatgcaatgaagaaattaattgacagacaagcagaaatactagagtctgaaaggaagaagtt |
39129900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 351
Target Start/End: Original strand, 39161214 - 39161469
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||||| |||| || |||||| |||||||| ||||||| |||||||| ||| ||||||||| |||||| | |
|
|
| T |
39161214 |
tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaa |
39161313 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcg |
296 |
Q |
| |
|
|||||| || || |||||| ||||||||| | ||||||||||| |||| ||| |||||||| | ||||| | |||||| ||| |||||||| | |
|
|
| T |
39161314 |
ttaattagtgaagaaacagaaatattagagtcaacaaggaagaagtcaataaatataatatcagaaatgaagaatagctgtgctctaatgaaggaatttg |
39161413 |
T |
|
| Q |
297 |
agtc-aataagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
|||| || |||||||| || ||| | ||| |||||||||||||||||||||||| |
|
|
| T |
39161414 |
agtcaaagcagaagcaatttaaagtccgggttaaggaacttgagtcaaaagagaag |
39161469 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #13
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 97 - 351
Target Start/End: Complemental strand, 39207980 - 39207725
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
||||| ||||||||||||||||| | ||||||||| |||| || |||||| |||||||| ||||||| |||||||| ||| ||||||||| |||||| | |
|
|
| T |
39207980 |
tgaaatgaaggaagaggaactcaggactctttccctaaaagttactgaatgtactttggtacttaagaccaaagaggaagatcttgatgcagtgaacaaa |
39207881 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcg |
296 |
Q |
| |
|
|||||| || || |||||| ||||||||| | ||||||||||| |||| ||| |||||||| | ||||| | |||||| ||| |||||||| | |
|
|
| T |
39207880 |
ttaattagtgaagaaacagaaatattagagtcaacaaggaagaagtcaataaatataatatcagaaatgaagaatagctgtgctctaatgaaggaatttg |
39207781 |
T |
|
| Q |
297 |
agtc-aataagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
|||| || |||||||| || ||| | ||| |||||||||||||||||||||||| |
|
|
| T |
39207780 |
agtcaaagcagaagcaatttaaagtccgggttaaggaacttgagtcaaaagagaag |
39207725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #14
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 318
Target Start/End: Complemental strand, 39479118 - 39478896
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
||||||||||||||||||||||||||||||| || | ||| || |||||| || | ||||||||||| |||| ||| |||||||||||||||||| | | |
|
|
| T |
39479118 |
tgaaaggaaggaagaggaactcaaggctcttaccgagaaagtttctgaatgtaatctggaacttaagaccaacgagcaagagcttgatgcaatgaaaata |
39479019 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcg |
296 |
Q |
| |
|
| |||| | | |||||||||| ||||||||| ||||||||||| | |||||| ||| ||||| || | |||||| || || |||||| | ||| || | |
|
|
| T |
39479018 |
tcaattagcggacaagcagaaatattagagtcttaaaggaagaaggtactaaaggtaatatcagtaaggcagaatgatcatgttcaaatcagggattttg |
39478919 |
T |
|
| Q |
297 |
agtcaat-aagaagcaacttgaa |
318 |
Q |
| |
|
||||||| ||||||| ||||||| |
|
|
| T |
39478918 |
agtcaatgaagaagcgacttgaa |
39478896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #15
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 97 - 259
Target Start/End: Original strand, 39467279 - 39467441
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
|||||| |||||||||| ||||||||||||| | |||||| ||||| ||| || | |||||||| || ||||||||| |||||||||| ||||||| | | |
|
|
| T |
39467279 |
tgaaagtaaggaagagggactcaaggctcttactcaaaaagttgctaaatgtaatatggaacttgagtccaaagagaaagagcttgattcaatgaaaata |
39467378 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatca |
259 |
Q |
| |
|
| || | || |||||||||| |||||||||| ||||||||||||| |||||| ||| |||| |
|
|
| T |
39467379 |
ctggttagcagacaagcagaaatattagagtccgaaaggaagaagttactaaaggtaatatca |
39467441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #16
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 48 - 173
Target Start/End: Original strand, 39123744 - 39123869
Alignment:
| Q |
48 |
caaaagaaatagaacttcgtcgagtcattgataacattgataaagaccgtgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatt |
147 |
Q |
| |
|
||||||||| ||||||| ||| | |||| |||||||||||||| | |||| || ||| ||| ||||||||||||| ||||| | | || |||||||| |
|
|
| T |
39123744 |
caaaagaaacagaactttgtcaaatcatggataacattgataaggtccgtaaagggatggagtgggaactcaaggctttttccaacagaactgctgaatg |
39123843 |
T |
|
| Q |
148 |
tactttggaacttaaggccaaagaga |
173 |
Q |
| |
|
|||||||||||||||| ||||||||| |
|
|
| T |
39123844 |
tactttggaacttaagaccaaagaga |
39123869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #17
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 260 - 342
Target Start/End: Complemental strand, 39381881 - 39381798
Alignment:
| Q |
260 |
gaaaaggagaatggtcgtgctcaaataaaggaattcgagtcaat-aagaagcaacttgaaggtcaggtcaaggaacttgagtca |
342 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||| |||||||| |||||||||||||| ||||||| || ||||||||||| |
|
|
| T |
39381881 |
gaaaaggagaatgattgtgctcaaataaaggaattggagtcaatgaagaagcaacttgagtgtcaggttaataaacttgagtca |
39381798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #18
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 39450975 - 39451022
Alignment:
| Q |
304 |
aagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
||||||| ||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
39450975 |
aagaagcgacttgaaggtcaggttaaggaacttgagtcaaaagagaag |
39451022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #19
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 39427481 - 39427412
Alignment:
| Q |
123 |
ctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaa |
192 |
Q |
| |
|
||||||||| |||||||||||||| |||| ||||||||||| | ||||||| ||||| |||||| ||||| |
|
|
| T |
39427481 |
ctctttcccgaaaaattgctgaatgtactgtggaacttaagactaaagagaaagagcgtgatgcgatgaa |
39427412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 304 - 351
Target Start/End: Original strand, 39467490 - 39467537
Alignment:
| Q |
304 |
aagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
||||||| | |||||| ||||||||||||||||||||||||| ||||| |
|
|
| T |
39467490 |
aagaagcgatttgaagatcaggtcaaggaacttgagtcaaaacagaag |
39467537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 54
Target Start/End: Original strand, 39215156 - 39215192
Alignment:
| Q |
18 |
tagaacttaatcaagtcaagggcaacatttcaaaaga |
54 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||| |
|
|
| T |
39215156 |
tagaacttaatcaagtcaatggtaacatttcaaaaga |
39215192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 97 - 350
Target Start/End: Original strand, 16112599 - 16112853
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
|||||| ||| |||||||||||||||||||| ||||||| |||| ||| || | ||||||||||| |||| |||| |||||||||||||||||| | | |
|
|
| T |
16112599 |
tgaaagcaagaaagaggaactcaaggctcttaaccaaaaagttgcggaaggtaatctggaacttaagtccaaggagaaagagcttgatgcaatgaaaata |
16112698 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcg |
296 |
Q |
| |
|
| |||| | | ||||| |||| |||||||||| |||||||| |||| |||||| ||| ||||| || | |||||| |||||||||||| | ||| | | |
|
|
| T |
16112699 |
tcaattagcggacaagcggaaatattagagtccgaaaggaagcagttactaaaggtaatatcagtaatgcagaatgatcgtgctcaaatgagggatgttg |
16112798 |
T |
|
| Q |
297 |
agtc-aataagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaa |
350 |
Q |
| |
|
| || || || |||| ||||||| ||| || |||||||| |||||||||||||| |
|
|
| T |
16112799 |
attcaaagaaaaagcgacttgaaaatcatgttaaggaactcgagtcaaaagagaa |
16112853 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 136
Target Start/End: Original strand, 16112564 - 16112596
Alignment:
| Q |
104 |
aaggaagaggaactcaaggctctttcccaaaaa |
136 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
16112564 |
aaggaagaggaactcaaggctcttacccaaaaa |
16112596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 97 - 351
Target Start/End: Original strand, 33559747 - 33560002
Alignment:
| Q |
97 |
tgaaaggaaggaagaggaactcaaggctctttcccaaaaaattgctgaatttactttggaacttaaggccaaagagatagagcttgatgcaatgaacaga |
196 |
Q |
| |
|
||||| || |||||||||||||| ||||||||||||||| ||||||||| |||| |||||||| ||| |||||||| ||| |||||||| ||||||| | |
|
|
| T |
33559747 |
tgaaatgacggaagaggaactcagggctctttcccaaaaggttgctgaatgtactgtggaacttcaggtcaaagagaaagatcttgatgcgatgaacaaa |
33559846 |
T |
|
| Q |
197 |
ttaattggtaggcaagcagaaaaattagagtccaaaaggaagaagttgctaaagctaacatcagaaaaggagaatggtcgtgctcaaataaaggaattcg |
296 |
Q |
| |
|
||| ||||| |||| || ||||||||||| || |||||| | | | | ||| |||||||| | ||||| | |||||| ||| |||||||| | |
|
|
| T |
33559847 |
ttagttggtgaagaagcggagaaattagagtctgcaaagaagaaatcgatgcatataatatcagaaatgaagaatagctgtgctctaatgaaggaatttg |
33559946 |
T |
|
| Q |
297 |
agtc-aataagaagcaacttgaaggtcaggtcaaggaacttgagtcaaaagagaag |
351 |
Q |
| |
|
|||| || |||||||| || ||||| ||| |||||||||||||||||||||||| |
|
|
| T |
33559947 |
agtcaaagcagaagcaatttaaaggttgggttaaggaacttgagtcaaaagagaag |
33560002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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