View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8083_high_3 (Length: 237)
Name: NF8083_high_3
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_high_3 |
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Alignment Details
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 14 - 217
Target Start/End: Original strand, 11128354 - 11128559
Alignment:
| Q |
14 |
aatataacaaagaaggcaaacaaatatatgtcttcaccaaaaacttcatttttgcaataccttgaatgatgatgtttgaagtaagttttgttgtcatgtt |
113 |
Q |
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| T |
11128354 |
aatataacaaagaaggcaaacaaatatatgtcttcaccaaagacttcatttttgctatacctctaatgatgttgtttgaaataagttttgttgtcatgtt |
11128453 |
T |
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| Q |
114 |
c--atatggatttaaaggtgataaaataccgtaaaaagtttcgatnnnnnnnnnnnnnnnnntgatcttttgtactagtagtataaacgatttaataatg |
211 |
Q |
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| T |
11128454 |
catatatggatttaaaggtgataaaataccgtaaaaagtttcgataaaaaacaaaaagaaaaggatcttttgtactagtagtataaacgatttaacaatg |
11128553 |
T |
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| Q |
212 |
aacaca |
217 |
Q |
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|||||| |
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| T |
11128554 |
aacaca |
11128559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 14 - 156
Target Start/End: Original strand, 11124023 - 11124165
Alignment:
| Q |
14 |
aatataacaaagaaggcaaacaaatatatgtcttcaccaaaaacttcatttttgcaataccttgaatgatgatgtttgaagtaagttttgttgtcatgtt |
113 |
Q |
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|||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||||| ||||||| | |||||| ||||||||||||||||||| |
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| T |
11124023 |
aatataacaaagaaggcaaacaaatatacgtcttcaccaaagacttcatttttgctatacctctaatgatgttatttgaaataagttttgttgtcatgtt |
11124122 |
T |
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| Q |
114 |
catatggatttaaaggtgataaaataccgtaaaaagtttcgat |
156 |
Q |
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| T |
11124123 |
catatggatttaaaggtgataaaataccgtaaaaagtttcgat |
11124165 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 27 - 138
Target Start/End: Original strand, 11114324 - 11114435
Alignment:
| Q |
27 |
aggcaaacaaatatatgtcttcaccaaaaacttcatttttgcaataccttgaatgatgatgtttgaagtaagttttgttgtcatgttcatatggatttaa |
126 |
Q |
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| T |
11114324 |
aggcaaacaaatatatgtcttcaccaaagacttcatttttgcaataccttcaatgatgttgtttgaaataagttttgttgttatgttcatatggatttaa |
11114423 |
T |
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| Q |
127 |
aggtgataaaat |
138 |
Q |
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| T |
11114424 |
aggtgatgaaat |
11114435 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 174 - 221
Target Start/End: Original strand, 11124184 - 11124231
Alignment:
| Q |
174 |
tgatcttttgtactagtagtataaacgatttaataatgaacacatttg |
221 |
Q |
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| T |
11124184 |
tgatctttcgtactagtagtataaacgatttaacaatgaacacatttg |
11124231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 54
Target Start/End: Original strand, 11143556 - 11143596
Alignment:
| Q |
14 |
aatataacaaagaaggcaaacaaatatatgtcttcaccaaa |
54 |
Q |
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| T |
11143556 |
aatataacaaagaaggaaaacaaatatatgttttcaccaaa |
11143596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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