View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8083_low_1 (Length: 423)
Name: NF8083_low_1
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 204; Significance: 1e-111; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 133 - 411
Target Start/End: Complemental strand, 48526090 - 48525831
Alignment:
| Q |
133 |
caggtgggtttattcatatgagagatggagccaatacacaatatgctacaagcacatctttcttgttcacggtatacagtgatttgcttgccaaatataa |
232 |
Q |
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| T |
48526090 |
caggtgggtttattcatatgagagatggagccaatacacaatatgctacaagcacatctttcttgttcacggtatacagtgatttgcttgccaaatataa |
48525991 |
T |
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| Q |
233 |
acaaaaagttaaatgtggaaacaaagaatttgactcatctcatgtccttgattttgccaaaaaacaagtaagtacatatacaccatttatacccatagcc |
332 |
Q |
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| T |
48525990 |
acaaaaagttaaatgtggaaacaaagaatttgactcatctcatgtccttgattttgccaaaaaacaagtaag---------------tatacccatagcc |
48525906 |
T |
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| Q |
333 |
cacatattagttttatattatcaaacaaacttggagggaggctcacaagatcaagttaatctcaaattttgcaatctct |
411 |
Q |
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| T |
48525905 |
cacatattaattttatattatcaaacaaactt----ggaggctcacaaaatcaagttaatctcaaattttgcaatctct |
48525831 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 106; E-Value: 7e-53
Query Start/End: Original strand, 133 - 306
Target Start/End: Complemental strand, 7221497 - 7221324
Alignment:
| Q |
133 |
caggtgggtttattcatatgagagatggagccaatacacaatatgctacaagcacatctttcttgttcacggtatacagtgatttgcttgccaaatataa |
232 |
Q |
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| T |
7221497 |
caggtgggtttattcatatgagagatggtgccaatacacaatatgccaccggtacatctttcttgttcactgtatatagtgatttacttgccaaatataa |
7221398 |
T |
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| Q |
233 |
acaaaaagttaaatgtggaaacaaagaatttgactcatctcatgtccttgattttgccaaaaaacaagtaagta |
306 |
Q |
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| T |
7221397 |
tcaaaaggtcaaatgtggaaacaaagaatttgattcagcccatctccttgattttgccaaaatgcaagtaagta |
7221324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 48526205 - 48526172
Alignment:
| Q |
18 |
cttaccaccaaatacatttgtctcctggtaaata |
51 |
Q |
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| T |
48526205 |
cttaccaccaaatacatttgtctcctggtaaata |
48526172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 113; Significance: 4e-57; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 134 - 306
Target Start/End: Original strand, 50306849 - 50307021
Alignment:
| Q |
134 |
aggtgggtttattcatatgagagatggagccaatacacaatatgctacaagcacatctttcttgttcacggtatacagtgatttgcttgccaaatataaa |
233 |
Q |
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|||||| |||||||| ||||||||||||||||||||||||||||| | |||||||| |||||||| || ||||||||||||||||||||||||||||| |
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| T |
50306849 |
aggtggctttattcacatgagagatggagccaatacacaatatgccatcagcacatcgttcttgtttactgtatacagtgatttgcttgccaaatataat |
50306948 |
T |
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| Q |
234 |
caaaaagttaaatgtggaaacaaagaatttgactcatctcatgtccttgattttgccaaaaaacaagtaagta |
306 |
Q |
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| T |
50306949 |
cagatagtcaaatgtgaaaacaaagaatttgactcagctcatctccttgattttgccaaaaaacaagtaagta |
50307021 |
T |
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