View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8083_low_2 (Length: 402)
Name: NF8083_low_2
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 342; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 15 - 387
Target Start/End: Complemental strand, 8067832 - 8067462
Alignment:
| Q |
15 |
cagagactaaaatagagtaacctaacgattacctattgagagttggtcatattcatcaggattgatctgatgtttatatcatgatagttgcttgatatat |
114 |
Q |
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| T |
8067832 |
cagagactaaaatagagtaacctaacgattacctattgagagttggtcatattcatcaggattggtctgatgtttatatcatgatagttgcttgatatat |
8067733 |
T |
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| Q |
115 |
gttttcttatatgaaatcatgataatgttatgtgtatcctgtgtttggttcgatacatgtttgcaatacctagaagagtaatatggaaattataagtagg |
214 |
Q |
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| T |
8067732 |
gtttgcttatatgaaatcatgataatgttatgtgtatcctgtgtttggtttgatacatgtttgcaatacctagaagggtaatatggaaattataagcagg |
8067633 |
T |
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| Q |
215 |
gttttatgatgttttggttattaccaaaattatattttagttgactaattctcaatattatatgaattcagttcaaagatacaaaaaattgtactttagt |
314 |
Q |
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| T |
8067632 |
gttttatgatgttttggttattaccaaaattatattttagttgactaattctca--attatatgaattcagttcaaagatacaaaaaattgtactttagt |
8067535 |
T |
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| Q |
315 |
tgactgattctcaatataatataatttcggtcaatacgaagaaactccattatcatgtttgtgaggttgattt |
387 |
Q |
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| T |
8067534 |
tgactgattctcaatataatataatttcggtcaatacgaagaaactccattatcatgtttgtgaggttgattt |
8067462 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 166 - 282
Target Start/End: Original strand, 8080486 - 8080605
Alignment:
| Q |
166 |
gatacatgtttgcaatacctagaagagtaatatggaaattataagtagggttttatga---tgttttggttattaccaaaattatattttagttgactaa |
262 |
Q |
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| T |
8080486 |
gatatatgtttgcaatacctagaatggtaatatggaaattataagtagggttttatgatgttgttttggttattaccaaaattatactttagttaattga |
8080585 |
T |
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| Q |
263 |
ttctcaatattatatgaatt |
282 |
Q |
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| T |
8080586 |
ttctcaatataatatgaatt |
8080605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 8080071 - 8080170
Alignment:
| Q |
15 |
cagagactaaaatagagtaacctaacgattacctattgagagttggtcatattcatcaggattgatctgatgtttatatcatgatagttgcttgatatat |
114 |
Q |
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||||||||| ||||||||||||||| ||||||||||||| |||||||||| |||| || |||||||||||||||||||| |||||||||| || |||||| |
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| T |
8080071 |
cagagactacaatagagtaacctaatgattacctattgaaagttggtcattttcaaca-gattgatctgatgtttatatgatgatagttggttaatatat |
8080169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 172 - 286
Target Start/End: Original strand, 8071558 - 8071675
Alignment:
| Q |
172 |
tgtttgcaatacctagaagagtaatatggaaattataagtagggttttatga---tgttttggttattaccaaaattatattttagttgactaattctca |
268 |
Q |
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| T |
8071558 |
tgtttgcaataccaagaagggtaatatggaaattataaggagggttttatgatgttgttttggttactaccaaagctatagtttagttgactgattttca |
8071657 |
T |
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| Q |
269 |
atattatatgaattcagt |
286 |
Q |
| |
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|||| | ||||||||||| |
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| T |
8071658 |
atataacatgaattcagt |
8071675 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 8080239 - 8080289
Alignment:
| Q |
113 |
atgttttcttatatgaaatcatgataatgttatgtgtatcctgtgtttggt |
163 |
Q |
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|||||| |||||||||||||||||||||| ||||||||||||| ||||||| |
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| T |
8080239 |
atgtttgcttatatgaaatcatgataatgctatgtgtatcctgagtttggt |
8080289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 299 - 366
Target Start/End: Original strand, 8080563 - 8080630
Alignment:
| Q |
299 |
aaaattgtactttagttgactgattctcaatataatataatttcggtcaatacgaagaaactccatta |
366 |
Q |
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| T |
8080563 |
aaaattatactttagttaattgattctcaatataatatgaattttgttaatacgaagaaactccatta |
8080630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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