View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8083_low_3 (Length: 395)
Name: NF8083_low_3
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 16 - 378
Target Start/End: Complemental strand, 34065787 - 34065426
Alignment:
| Q |
16 |
gtagattattctaagaatttcttaacctttttccttctttatttgatagaagcttattgctacgatcttttccttgccgactttttggcatttctattcc |
115 |
Q |
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| T |
34065787 |
gtagatttttctaagaatttcttaacctttttc-ttctttatttgatagaagcttattgctacaatcttttccttgccgactttttggcatttctattcc |
34065689 |
T |
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| Q |
116 |
catgcctcgtctaaatactcctgaggtaatgtgctttgttgattacattttgttaacgcatgttatggaagatattgacttcattcgttcgtgnnnnnnn |
215 |
Q |
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||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
34065688 |
catgcctcgtccaaatactcctcaggtaatgtgctttgttgattacattttgttaacgcatgttatggaagatattgacttcatttgttcgtgttttttt |
34065589 |
T |
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| Q |
216 |
agagatatcaatcaattgtagaggctcaacctctacatgcatgcaatctagtatgttggttgcaacttattcaaggtggaccgataatccaacattttac |
315 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
34065588 |
agagatatcaatcaattgtagaggctcaacctctacatgcatgcaatctagtatgttggttgcaacttattcaaggtggaccgataatccaacatttcac |
34065489 |
T |
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| Q |
316 |
aaattgcaaatgtggtcctgaaagaccgtatcgtcactcttgttgataatgttgtcatggagt |
378 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34065488 |
aaattgcaaatgtggtcctgaaagaccgtatcgtcactcttgttgataatgttgtcatggagt |
34065426 |
T |
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