View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8083_low_6 (Length: 320)
Name: NF8083_low_6
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_low_6 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 17 - 260
Target Start/End: Complemental strand, 18920853 - 18920610
Alignment:
| Q |
17 |
gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagcggaacaggaaaagaca |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18920853 |
gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcggttatggaaacgtcgattgggtgaattggaagcggaacaggaaaagaca |
18920754 |
T |
|
| Q |
117 |
ataaaaagagatgaagttgaaattgaaaattgcatgaaacgccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18920753 |
ataaaaagagatgaagttgaaattgaaaattgcatgaaacaccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc |
18920654 |
T |
|
| Q |
217 |
cattttggatttttcttttatacaaggggtgttttagtattttc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18920653 |
cattttggatttttcttttatacaaggggtgttttagtattttc |
18920610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 17306161 - 17306404
Alignment:
| Q |
17 |
gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagcggaacaggaaaagaca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
17306161 |
gagataaggagtgtgagagtgagagagactacgatgagggctttcaactcagttatggcaacgccgattgggtgaattggaagcggaacaggaaacgaca |
17306260 |
T |
|
| Q |
117 |
ataaaaagagatgaagttgaaattgaaaattgcatgaaacgccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc |
216 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||||| |||||||||||||||| ||||||| |||||| |||||||| |||||||||||||||||| |
|
|
| T |
17306261 |
ataaaaagagatggagttgaaattgaaaattgaatgaaacaccatgttagaagagccagagggaatgaaggatcatgctcggctagtggagagggtgggc |
17306360 |
T |
|
| Q |
217 |
cattttggatttttcttttatacaaggggtgttttagtattttc |
260 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17306361 |
cattttggatttttcttttatacaaagggtgttttagtattttc |
17306404 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 17 - 260
Target Start/End: Original strand, 17273296 - 17273536
Alignment:
| Q |
17 |
gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagcggaacaggaaaagaca |
116 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||| ||| |
|
|
| T |
17273296 |
gagataaggagtgtgagag--agagagactgcgatgagggctttcaactcggttatggcaacgccgattgggtgaatttgaagcggaacaggaaacgacg |
17273393 |
T |
|
| Q |
117 |
ataaaaagagatgaagttgaaattgaaaattgcatgaaacgccatgttagaagagcctgagggaaggaaggaccatgctcgactagtggagagggtgggc |
216 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
17273394 |
gtaaaa-gagatgaagttgaaattgaaaattgaatgaaacaccatgttagaagagcctgagggaaggaaggaccatgctcggctagtggagagggtgggc |
17273492 |
T |
|
| Q |
217 |
cattttggatttttcttttatacaaggggtgttttagtattttc |
260 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17273493 |
cattttggatttttcttttatacaaggggtgttttagtattttc |
17273536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 17289662 - 17289745
Alignment:
| Q |
17 |
gagataaggagtgtgagagtgagagagactgcgatgagggctttcaactcgattatggaaacgccgattgggtgaattggaagc |
100 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||| ||| |||||||||||||||||||| |
|
|
| T |
17289662 |
gagataaggagtgcgagagggagagagactgcgatgagggctttcaactcggttatggcaacatcgattgggtgaattggaagc |
17289745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 200 - 260
Target Start/End: Original strand, 47561158 - 47561219
Alignment:
| Q |
200 |
tagtggagagggtgggccattttggatttttcttttat-acaaggggtgttttagtattttc |
260 |
Q |
| |
|
|||||||||||||| ||| ||||| |||||||||| || |||| | |||||||||||||||| |
|
|
| T |
47561158 |
tagtggagagggtgagccgttttgtatttttctttaataacaaagagtgttttagtattttc |
47561219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University