View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8083_low_7 (Length: 276)
Name: NF8083_low_7
Description: NF8083
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8083_low_7 |
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Alignment Details
Target: chr5 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 15 - 259
Target Start/End: Original strand, 26187309 - 26187553
Alignment:
| Q |
15 |
gaagaaacgtttctctaacttgtaaccagaatttcacctactctaattaatgaaattccacaattctcgagtttattctgtatatgttatatactttgaa |
114 |
Q |
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| T |
26187309 |
gaagaaacgtttctctaacttgtaaccagaatttcacctactctaattaatgaaattccacaattctcgagtttattctgtatatattatatactttgaa |
26187408 |
T |
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| Q |
115 |
atggttcaagtttcacttaaaaactatgtctatagcaaacattatggataaattactaatagggtgtatatttacaagttgtagaattttactttgtttc |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26187409 |
atggttcaagtttcacttaaaaactatgtctatagcaaacattatggataaattactaatagggtgtatatttacaagttgtagaattttactttgtttc |
26187508 |
T |
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| Q |
215 |
ttctctcacttacttaatcgattctactcctaaatttcttaatct |
259 |
Q |
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| T |
26187509 |
ttctctcacttacttaatcgattctactcctaaatttcttaatct |
26187553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 96
Target Start/End: Original strand, 33641301 - 33641380
Alignment:
| Q |
17 |
agaaacgtttctctaacttgtaaccagaatttcacctactctaattaatgaaattccacaattctcgagtttattctgta |
96 |
Q |
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| T |
33641301 |
agaaatgtttctctaacttgcaaccagaacttctcctactctaattaatgaaattccacgattcttgagcctattctgta |
33641380 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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