View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8084_high_1 (Length: 863)

Name: NF8084_high_1
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8084_high_1
NF8084_high_1
[»] chr1 (5 HSPs)
chr1 (16-845)||(31322095-31322926)
chr1 (564-743)||(31321268-31321447)
chr1 (570-713)||(34650747-34650890)
chr1 (135-195)||(42563705-42563765)
chr1 (286-335)||(17833437-17833486)
[»] chr5 (6 HSPs)
chr5 (569-722)||(38997568-38997722)
chr5 (564-720)||(13163522-13163675)
chr5 (641-743)||(37498509-37498611)
chr5 (577-698)||(28803991-28804111)
chr5 (609-712)||(37497494-37497596)
chr5 (570-625)||(28804602-28804657)
[»] chr8 (5 HSPs)
chr8 (564-744)||(2687392-2687573)
chr8 (597-729)||(27824119-27824251)
chr8 (572-623)||(27823712-27823763)
chr8 (640-692)||(27166985-27167037)
chr8 (641-686)||(17097344-17097389)
[»] chr6 (1 HSPs)
chr6 (571-744)||(28636113-28636291)
[»] chr7 (5 HSPs)
chr7 (635-704)||(3697875-3697944)
chr7 (571-664)||(3704689-3704782)
chr7 (570-686)||(35711282-35711398)
chr7 (619-734)||(28686756-28686870)
chr7 (587-672)||(39705007-39705092)
[»] chr2 (6 HSPs)
chr2 (575-743)||(12028377-12028538)
chr2 (571-657)||(18160734-18160820)
chr2 (564-649)||(18160636-18160721)
chr2 (571-657)||(18308481-18308567)
chr2 (298-336)||(21612240-21612278)
chr2 (564-649)||(18159720-18159805)
[»] chr4 (7 HSPs)
chr4 (588-703)||(8332215-8332330)
chr4 (739-822)||(42602474-42602557)
chr4 (564-615)||(8331535-8331586)
chr4 (619-692)||(7500711-7500784)
chr4 (592-672)||(7491617-7491697)
chr4 (592-667)||(36139553-36139628)
chr4 (619-692)||(7492680-7492753)
[»] scaffold0015 (1 HSPs)
scaffold0015 (286-335)||(47845-47894)


Alignment Details
Target: chr1 (Bit Score: 729; Significance: 0; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 729; E-Value: 0
Query Start/End: Original strand, 16 - 845
Target Start/End: Complemental strand, 31322926 - 31322095
Alignment:
Q  16 tatactaatcaaagtagaaatagaccagttcttttataagcttcaaattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt 115  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322926 tatactaatcaaagtagaaatagaccagttcttttataagctttatattcaaataattgtaaacggtttatactcttaagtagttatcgaagatatattt 31322827  T
Q  116 caacatataagttttttcattttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcattggaaaatcggtgaggtaca 215  Q
    ||||||||||||| ||||||||||||| ||||||| || |||||||||||||| ||||||||||||| | |||||||||||||||||||||||||||| |    
T  31322826 caacatataagttgtttcattttgttactatgttattggtacaaagttttcactgtcgtttaccagtaactaatcttcattggaaaatcggtgaggtata 31322727  T
Q  216 taaggtggattttctcctttcaatcgagttttctccatacgcaagagatgatgattgaacccttaaccagttgctgaaggtgtccaaatcccttatcact 315  Q
    |||||||| || || ||||||||||||||||||||| ||| || ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||    
T  31322726 taaggtgggttctcccctttcaatcgagttttctccttacacaggagatgatgattgaacccttaaccacttgctgaaggtgttcaaatcccttatcact 31322627  T
Q  316 tggatcaatccattattggtaggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattag 415  Q
    ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322626 tggatcaattcattattgataggtcggtggtataagttataacgctaaaaaagtatcaagaagaatatttaatttagagtttgatgcatgttgatattag 31322527  T
Q  416 tttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgacta 515  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322526 tttccccatcccttgactaatttaccactaacatttgcctataaaaaatcataatcaattagtgtttaatggatcatggggctaggggtgcatacgacta 31322427  T
Q  516 agatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 615  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31322426 agatgactaaatcttacataatatacttggagtctaattgtgtagcataaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 31322327  T
Q  616 tttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcaca--tatagatcataaaactgtaaaattc 713  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||    
T  31322326 tttatttttatcttagtcgcacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatatagatcataaaactgtaaaattc 31322227  T
Q  714 tcatgatttccacaaaagtatggttctttttggttctcattcgtaacaccaatcctacaattgttgttatggcagaataataagtggaacaaattgaggc 813  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  31322226 tcatgatttccacaaaagcatggttctttttggttctcattcgtaacaccaatcctacaattgttgttatggcagaacaataagtggaacaaattgaggc 31322127  T
Q  814 aaggttggatagaggagatgcttgatagggag 845  Q
    ||||||||||||||||||||||||||||||||    
T  31322126 aaggttggatagaggagatgcttgatagggag 31322095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 112; E-Value: 4e-56
Query Start/End: Original strand, 564 - 743
Target Start/End: Original strand, 31321268 - 31321447
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 663  Q
    |||||||||||||||||||||||| |||||||||| ||| ||||||||||||| |||||| ||||||| | ||||||||||||||||| |||||||||||    
T  31321268 aaattaaaatttaaaaaccttggtccttccatctttttcctgtctttcttcctctattttcatcttagccgcacaccttcaccatttcgtctacccatat 31321367  T
Q  664 cctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttt 743  Q
    |||||||||||| || || |||||| ||||||||||||||| ||||||| || |||||| |||||||| |||||||||||    
T  31321368 cctccatttctgttaaaatttcacagatagatcataaaactataaaattttcgtgattttcacaaaagcatggttctttt 31321447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 570 - 713
Target Start/End: Original strand, 34650747 - 34650890
Alignment:
Q  570 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 669  Q
    |||||| |||| |||||||||| |||||  ||| |||||||||| || ||||||||| |||||  |||| ||||||||||||||||||||||| |||  |    
T  34650747 aaattttaaaatcttggttcttacatctatttcatgtctttctttctctatttttattttagttgcacatcttcaccatttcttctacccatacccttta 34650846  T
Q  670 tttctgctataaattcacatatagatcataaaactgtaaaattc 713  Q
    ||||||||| ||||||| | || |||||||| || |||||||||    
T  34650847 tttctgctaaaaattcatagattgatcataataccgtaaaattc 34650890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 135 - 195
Target Start/End: Original strand, 42563705 - 42563765
Alignment:
Q  135 ttttgttattatgttactgatacaaagttttcaccgtcgtttaccagtgattaatcttcat 195  Q
    |||| ||| |||| || |||||||||||||| ||| ||||||| |||||||||||||||||    
T  42563705 tttttttactatgatattgatacaaagtttttaccctcgtttaacagtgattaatcttcat 42563765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 17833486 - 17833437
Alignment:
Q  286 ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt 335  Q
    ||||| |||| |||||||||||||| ||||||||| |||||||| |||||    
T  17833486 ttgcttaaggggtccaaatcccttaccacttggataaatccattgttggt 17833437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 83; Significance: 7e-39; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 83; E-Value: 7e-39
Query Start/End: Original strand, 569 - 722
Target Start/End: Original strand, 38997568 - 38997722
Alignment:
Q  569 aaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcc 668  Q
    |||||||||||||||||||||||||||||| ||| ||| |||||||||  ||||| ||||||||| ||||| |||||||||||||||||| ||||||||     
T  38997568 aaaatttaaaaaccttggttcttccatctttttcctgtttttcttcctccattttcatcttagtcgcacacattcaccatttcttctacctatatcctcg 38997667  T
Q  669 atttctgct-ataaattcacatatagatcataaaactgtaaaattctcatgattt 722  Q
    ||||||||| | ||| ||||||||||||||||||| ||| ||||||  |||||||    
T  38997668 atttctgctaaaaaaatcacatatagatcataaaattgtcaaattccgatgattt 38997722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 1e-25
Query Start/End: Original strand, 564 - 720
Target Start/End: Complemental strand, 13163675 - 13163522
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatat 663  Q
    ||||| ||||||||||| ||| |||||| || ||| | |||||||||||||||| ||||| | ||||  | ||||||||||| |||| ||||||| ||||    
T  13163675 aaattcaaatttaaaaatcttagttctttca-cttat-cgtgtctttcttccttcattttcaacttaaccgcacaccttcacaattt-ttctacctatat 13163579  T
Q  664 cctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgat 720  Q
    ||||||| | ||||| ||||||||||||||||||||||||| |||||||| ||||||    
T  13163578 cctccatatttgctaaaaattcacatatagatcataaaactttaaaattcacatgat 13163522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 641 - 743
Target Start/End: Complemental strand, 37498611 - 37498509
Alignment:
Q  641 ttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttct 740  Q
    |||||||||||||||| | || |||||||||| ||||| ||||||||| |||||||||||||||||||||||| |||||||| |||||||  ||| ||||    
T  37498611 ttcaccatttcttctagctatgtcctccatttatgctaaaaattcacaaatagatcataaaactgtaaaattcccatgattttcacaaaaacatgcttct 37498512  T
Q  741 ttt 743  Q
    |||    
T  37498511 ttt 37498509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 6e-24
Query Start/End: Original strand, 577 - 698
Target Start/End: Original strand, 28803991 - 28804111
Alignment:
Q  577 aaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgc 676  Q
    ||||||||| |||||||||||| ||| | ||||||||| |  ||||| ||||||||| ||||||||||||||||||||||||||||||| |||||||||     
T  28803991 aaaaccttgattcttccatctttttcctatctttcttcgtcaattttcatcttagtcgcacaccttcaccatttcttctacccatatcc-ccatttctgt 28804089  T
Q  677 tataaattcacatatagatcat 698  Q
     | ||||||||| | |||||||    
T  28804090 caaaaattcacaaagagatcat 28804111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 609 - 712
Target Start/End: Original strand, 37497494 - 37497596
Alignment:
Q  609 ttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactgtaa 708  Q
    ||||||||  ||||| ||||||||  ||||| |||||||||||||||| ||||||| ||||||| ||||| || |||||  |||||||||||| | ||||    
T  37497494 ttcttcctccattttcatcttagttgcacactttcaccatttcttctatccatatcatccatttatgcta-aatttcaccgatagatcataaagccgtaa 37497592  T
Q  709 aatt 712  Q
    ||||    
T  37497593 aatt 37497596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 570 - 625
Target Start/End: Complemental strand, 28804657 - 28804602
Alignment:
Q  570 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttattttta 625  Q
    ||||||||||| ||| ||||||||||||||||  |||||||||||||  |||||||    
T  28804657 aaatttaaaaatcttagttcttccatcttctttttgtctttcttcctccattttta 28804602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 4e-34; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 564 - 744
Target Start/End: Original strand, 2687392 - 2687573
Alignment:
Q  564 aaattaaaatttaaaaaccttgg-ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccata 662  Q
    ||||| ||||||||||||||||| || ||| |||| ||||  |||||||||| |  ||||| ||||||| | ||||||||||||||||    ||||||||    
T  2687392 aaattcaaatttaaaaaccttgggtttttcaatct-cttccggtctttcttcttccattttcatcttagccgcacaccttcaccattttcaatacccata 2687490  T
Q  663 tcctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatgatttccac-aaaagtatggttcttttt 744  Q
    |||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||| ||| ||||| ||||||||||||    
T  2687491 tcctccatttctgctaaaaattcatacatagatcataaaactgtaaaattcccatgattttcacaaaaagcatggttcttttt 2687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 597 - 729
Target Start/End: Complemental strand, 27824251 - 27824119
Alignment:
Q  597 ttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatc 696  Q
    |||||| ||||||| |||||  ||||||||||| | | ||||| |||||||||| |||||| |||||| || | |||| ||  ||||||||| |||||||    
T  27824251 ttcttcatgtcttttttcctccatttttatctttgccgcacacattcaccatttattctactcatatcttcgaattctactgaaaattcacaaatagatc 27824152  T
Q  697 ataaaactgtaaaattctcatgatttccacaaa 729  Q
    |||| ||| ||||||||||||||| || |||||    
T  27824151 ataatactttaaaattctcatgatatctacaaa 27824119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 27823712 - 27823763
Alignment:
Q  572 atttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttt 623  Q
    ||||||||||||||||||||||||||||||| |||||||||||||| |||||    
T  27823712 atttaaaaaccttggttcttccatcttcttcttgtctttcttccttcatttt 27823763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 640 - 692
Target Start/End: Complemental strand, 27167037 - 27166985
Alignment:
Q  640 cttcaccatttcttctacccatatcctccatttctgctataaattcacatata 692  Q
    ||||||||||||||||||||||||| ||||||| ||||| ||||||| |||||    
T  27167037 cttcaccatttcttctacccatatcttccatttatgctaaaaattcatatata 27166985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 641 - 686
Target Start/End: Original strand, 17097344 - 17097389
Alignment:
Q  641 ttcaccatttcttctacccatatcctccatttctgctataaattca 686  Q
    |||| ||||||||||||||||||||||||||  ||||| |||||||    
T  17097344 ttcaacatttcttctacccatatcctccattcatgctaaaaattca 17097389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 9e-23; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 9e-23
Query Start/End: Original strand, 571 - 744
Target Start/End: Complemental strand, 28636291 - 28636113
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgt----gtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcct 666  Q
    ||||||||||| |||||| || |||||||||| |    || |||||||||  ||||| ||||||||| ||||||||||||||||||| |||||| |||||    
T  28636291 aatttaaaaacattggttatttcatcttcttcatatatgtatttcttcctccattttcatcttagtctcacaccttcaccatttcttttaccca-atcct 28636193  T
Q  667 ccatttctgctataaattca--catatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttcttttt 744  Q
    |||||| ||||| |||   |   | ||| ||||||||||| |||||||| |||||||||||||||||||| ||| |||||    
T  28636192 ccatttttgctaaaaaaaaaataacataaatcataaaactataaaattcccatgatttccacaaaagtatagtttttttt 28636113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 50; Significance: 4e-19; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 635 - 704
Target Start/End: Original strand, 3697875 - 3697944
Alignment:
Q  635 cacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaact 704  Q
    ||||||||||| |||| ||||||||||||| ||||||||||||| ||||||||| |||||||||||||||    
T  3697875 cacaccttcactatttattctacccatatcgtccatttctgctaaaaattcacagatagatcataaaact 3697944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 46; E-Value: 9e-17
Query Start/End: Original strand, 571 - 664
Target Start/End: Original strand, 3704689 - 3704782
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatc 664  Q
    ||||||||||| |||| ||||||||||||||| |||||||||||||  ||||    ||||||  |||||||||| |||||||||||||||||||    
T  3704689 aatttaaaaacattggctcttccatcttcttcatgtctttcttcctccatttcccccttagttgcacaccttcagcatttcttctacccatatc 3704782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 570 - 686
Target Start/End: Complemental strand, 35711398 - 35711282
Alignment:
Q  570 aaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctcca 669  Q
    |||||||||||| || || |||||||||||||| |||||||||||||   |||| | ||||    || ||||||||| ||||||||| |||| |||||||    
T  35711398 aaatttaaaaacttttgtccttccatcttcttcatgtctttcttcctcccttttcaacttacctgcataccttcaccgtttcttctatccatttcctcca 35711299  T
Q  670 tttctgctataaattca 686  Q
    ||||||||| |||||||    
T  35711298 tttctgctaaaaattca 35711282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 619 - 734
Target Start/End: Original strand, 28686756 - 28686870
Alignment:
Q  619 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatatagatcataaaactgtaaaattctcatg 718  Q
    |||||||||||||   |||||||||| |||| ||||||| ||||||| ||||||  |||  |||||| || || ||||||||||||||||||||  ||||    
T  28686756 atttttatcttagcagcacaccttcatcatt-cttctactcatatcccccattttagctgaaaattcgcagatggatcataaaactgtaaaatttccatg 28686854  T
Q  719 atttccacaaaagtat 734  Q
    |||||| |||||||||    
T  28686855 atttcctcaaaagtat 28686870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 587 - 672
Target Start/End: Complemental strand, 39705092 - 39705007
Alignment:
Q  587 ttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 672  Q
    |||||||||| ||||| ||||||||||||   ||||| ||||| | | ||||  ||||||||||||| ||||||||| ||||||||    
T  39705092 ttcttccatcctcttcatgtctttcttccaccattttcatcttggccgcacatattcaccatttcttatacccatattctccattt 39705007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 4e-19; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 575 - 743
Target Start/End: Original strand, 12028377 - 12028538
Alignment:
Q  575 taaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttct 674  Q
    ||||||| ||| |||||||||||||||| ||||||||| | |  ||||| ||||||| | |||||||| |  ||||||| ||  ||||||||||||||||    
T  12028377 taaaaacattgtttcttccatcttcttcatgtctttctac-tccattttcatcttagccgcacacctttattatttcttataaacatatcctccatttct 12028475  T
Q  675 gctataaattcacatatagatcataaaactgtaaaattctcatgatttccacaaaagtatggttctttt 743  Q
    |||| ||||| ||| ||||||||      ||||||||||  |||||||||||||||  |||||||||||    
T  12028476 gctaaaaatttacaaatagatca------tgtaaaattcatatgatttccacaaaaacatggttctttt 12028538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 571 - 657
Target Start/End: Complemental strand, 18160820 - 18160734
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 657  Q
    ||||||||||  | |||||||||||||||||| | ||||| ||||   ||||| ||||||| | |||| ||||||||||||||||||    
T  18160820 aatttaaaaatttcggttcttccatcttcttcctatcttttttccaccattttcatcttagccgcacatcttcaccatttcttctac 18160734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 564 - 649
Target Start/End: Original strand, 18160636 - 18160721
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 649  Q
    ||||| ||||||||||   |||||||||||||| ||||| ||||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18160636 aaattcaaatttaaaatttttggttcttccatcatcttcctgtctttcttccaccattttcattgtagtcgcacaccttcaccatt 18160721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 571 - 657
Target Start/End: Original strand, 18308481 - 18308567
Alignment:
Q  571 aatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctac 657  Q
    ||||||||||  | |||||||||||||||||| | ||||||||||   ||||| |||||||   |||| ||| ||||||||||||||    
T  18308481 aatttaaaaatttcggttcttccatcttcttcctatctttcttccaccattttcatcttagctgcacatctttaccatttcttctac 18308567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 21612240 - 21612278
Alignment:
Q  298 tccaaatcccttatcacttggatcaatccattattggta 336  Q
    |||||||| ||||||||||||||||||||||| ||||||    
T  21612240 tccaaatctcttatcacttggatcaatccattgttggta 21612278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 564 - 649
Target Start/End: Original strand, 18159720 - 18159805
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatt 649  Q
    ||||| ||||||||||   |||||||||||||| ||||| | ||||||||||   ||||| ||  ||||| |||||||||||||||    
T  18159720 aaattcaaatttaaaatttttggttcttccatcatcttcctatctttcttccaccattttcattgtagtcgcacaccttcaccatt 18159805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 48; Significance: 6e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 588 - 703
Target Start/End: Complemental strand, 8332330 - 8332215
Alignment:
Q  588 tcttccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcac 687  Q
    |||||||||||||||   | ||||||||| |||||| ||||||| | ||||| |||| ||||||||||| |||||||  |||||||||||| ||||||||    
T  8332330 tcttccatcttcttccaatttttcttcctctattttcatcttagccacacactttcatcatttcttctatccatatcgaccatttctgctaaaaattcac 8332231  T
Q  688 atatagatcataaaac 703  Q
    | |||  |||||||||    
T  8332230 aaatatgtcataaaac 8332215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 739 - 822
Target Start/End: Complemental strand, 42602557 - 42602474
Alignment:
Q  739 ctttttggttctcattcgtaacaccaatcctacaattgttgttatggcagaataataagtggaacaaattgaggcaaggttgga 822  Q
    ||||||||  |||||||||| ||||||||||||||||||||||||||||||  || ||| |||||| | |||||||||||||||    
T  42602557 ctttttgggcctcattcgtagcaccaatcctacaattgttgttatggcagagcaagaagcggaacacaatgaggcaaggttgga 42602474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 564 - 615
Target Start/End: Original strand, 8331535 - 8331586
Alignment:
Q  564 aaattaaaatttaaaaaccttggttcttccatcttcttcgtgtctttcttcc 615  Q
    ||||| |||||||||||| |||||||||||||||||||  ||||||||||||    
T  8331535 aaattcaaatttaaaaactttggttcttccatcttcttgttgtctttcttcc 8331586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 619 - 692
Target Start/End: Complemental strand, 7500784 - 7500711
Alignment:
Q  619 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatata 692  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||  ||||| |||| ||||||||    
T  7500784 attttcatcttagccgcacatattcactatttcttctacccatatcctccattcatgctaaaaatccacatata 7500711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 592 - 672
Target Start/End: Original strand, 7491617 - 7491697
Alignment:
Q  592 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctccattt 672  Q
    ||||||||||| | ||||||||||   ||||| ||||||||| ||||  |||||  ||||||||||||||||||| |||||    
T  7491617 ccatcttcttcatatctttcttccaccattttcatcttagtcgcacatattcacagtttcttctacccatatccttcattt 7491697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 592 - 667
Target Start/End: Complemental strand, 36139628 - 36139553
Alignment:
Q  592 ccatcttcttcgtgtctttcttcctttatttttatcttagtcccacaccttcaccatttcttctacccatatcctc 667  Q
    ||||||||||| ||||||||||||   ||||| ||||||||| ||||  |||||||||||||| | | ||||||||    
T  36139628 ccatcttcttcatgtctttcttccaccattttaatcttagtcgcacatattcaccatttcttcaatctatatcctc 36139553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 619 - 692
Target Start/End: Complemental strand, 7492753 - 7492680
Alignment:
Q  619 atttttatcttagtcccacaccttcaccatttcttctacccatatcctccatttctgctataaattcacatata 692  Q
    ||||| ||||||| | ||||  ||||| |||||||||||||||||||||||||  ||||| || | ||||||||    
T  7492753 attttcatcttagccgcacatattcactatttcttctacccatatcctccattcatgctaaaactccacatata 7492680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 47894 - 47845
Alignment:
Q  286 ttgctgaaggtgtccaaatcccttatcacttggatcaatccattattggt 335  Q
    ||||| |||||| |||||| |||||||||||||| ||||||||| |||||    
T  47894 ttgcttaaggtgcccaaataccttatcacttggaccaatccattgttggt 47845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University