View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8084_high_3 (Length: 697)
Name: NF8084_high_3
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_high_3 |
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Alignment Details
Target: chr4 (Bit Score: 577; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 577; E-Value: 0
Query Start/End: Original strand, 16 - 666
Target Start/End: Original strand, 29098579 - 29099225
Alignment:
| Q |
16 |
atggtcaaatgatggtgcataaactgatccatggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagctccccttctg |
115 |
Q |
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| T |
29098579 |
atggtcaaatgatggtgcataaactgatccatggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagctccccttctg |
29098678 |
T |
|
| Q |
116 |
gcatttgcttcctcaggattcttcatagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacct |
215 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||| |
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| T |
29098679 |
gcatgtgcttcctcgggattcttcatagcatctagttcagaacgataaagatgaaaaccatccatgcgaatcacaatagcaacatcaggaggttgaacct |
29098778 |
T |
|
| Q |
216 |
gagagtcaaaggaagaagctttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccag |
315 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29098779 |
gagagtcaaaggaagaagttttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccag |
29098878 |
T |
|
| Q |
316 |
gccaacaaaaaatttataattaggatttaacgacattgacgctggaggcagaattcgtttaaccaatgtctcatatatctcatcaacaccacttcttccc |
415 |
Q |
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| T |
29098879 |
gccaacaaaaactttataattaggatttaacgacattgacgctggaggcagaattcgtttaaccaatgtatcatatatctcatcaacacca---cttccc |
29098975 |
T |
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| Q |
416 |
tctacaacttgaacatgatccttttcagtagattaaaccttgaagagattactcttgttagtgcgatcgcgtgttgaagaaaatgataattgaacaaatt |
515 |
Q |
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| T |
29098976 |
tctacaacttgaacatgatccttttcagtagataaaaccttgaagagattactcttgttagtgcgatcgcgtgttgaagaaaatgataattgaacaaatt |
29099075 |
T |
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| Q |
516 |
tgttacgccgcgcgatggatcattgaacacgaattccaaccgcgagtgattgattttgttatcggcaaggaaggaatttttcccgtcgttgaggagaagg |
615 |
Q |
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|||||| |||||||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29099076 |
tgttacaccgcgcgatgga-gattgaacacgaattccgaccgccagtgattgattttgttatcggcaaggaaggaatttttcccgtcgttgaggagaagg |
29099174 |
T |
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| Q |
616 |
ttacttccatttgctcaatcaaatattgaagcttcaattcaatgattacta |
666 |
Q |
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| T |
29099175 |
ttacttccatttgctcaatcaaatattgaagcttgaattcaatgattacta |
29099225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 189; Significance: 1e-102; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 136 - 328
Target Start/End: Original strand, 38537783 - 38537975
Alignment:
| Q |
136 |
cttcatagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtcaaaggaagaagct |
235 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38537783 |
cttcaaagcatctagttcagaacgataaagatgaaaaccatccatgggaatcacaatagcaacgtcaggaggttgaacctgagagtcaaaggaagaagct |
38537882 |
T |
|
| Q |
236 |
ttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccaggccaacaaaaaat |
328 |
Q |
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| T |
38537883 |
ttctctggccaaagcttgtttatgcgtttggctacttcatgcgctatggtgctttttccagcaccaggtggaccagccaggccaacaaaaaat |
38537975 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 329 - 408
Target Start/End: Original strand, 38538176 - 38538255
Alignment:
| Q |
329 |
ttataattaggatttaacgacattgacgctggaggcagaattcgtttaaccaatgtctcatatatctcatcaacaccact |
408 |
Q |
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| T |
38538176 |
ttataattaggatttaacgacactgacgctggaggcataattcgtttaaccaatgtatcatatatctcatcaacaccact |
38538255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 487 - 583
Target Start/End: Original strand, 38538567 - 38538662
Alignment:
| Q |
487 |
tgttgaagaaaatgataattgaacaaatttgttacgccgcgcgatggatcattgaacacgaattccaaccgcgagtgattgattttgttatcggcaa |
583 |
Q |
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||||||||||||||||||||| | ||||||||||| |||||||||| | |||||||| ||||| | |||||||||||||||||||||||||||| |
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| T |
38538567 |
tgttgaagaaaatgataattgcgcggatttgttacgcggcgcgatggag-agtgaacacggattccgatcgcgagtgattgattttgttatcggcaa |
38538662 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 45 - 106
Target Start/End: Original strand, 38537197 - 38537258
Alignment:
| Q |
45 |
catggactctcacattcttgagacaggtaagtagtcgcgtgggattgaatgtccatggagct |
106 |
Q |
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| T |
38537197 |
catgaactctcagattcttgagacaggtaagcagtcgcgtaggattgaatgtccatggagct |
38537258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 410 - 455
Target Start/End: Original strand, 38538326 - 38538371
Alignment:
| Q |
410 |
cttccctctacaacttgaacatgatccttttcagtagattaaacct |
455 |
Q |
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|||||||||||||||||||||||||| | ||||| |||| |||||| |
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| T |
38538326 |
cttccctctacaacttgaacatgatcttcttcagaagataaaacct |
38538371 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 593 - 650
Target Start/End: Original strand, 38538751 - 38538807
Alignment:
| Q |
593 |
ttttcccgtcgttgaggagaaggttacttccatttgctcaatcaaatattgaagcttc |
650 |
Q |
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|||| ||||||||||||||||| ||| ||||| || |||||||||||| ||||||||| |
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| T |
38538751 |
ttttgccgtcgttgaggagaagtttatttcca-ttactcaatcaaatactgaagcttc |
38538807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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