View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8084_low_12 (Length: 317)
Name: NF8084_low_12
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 12 - 286
Target Start/End: Original strand, 44526114 - 44526388
Alignment:
| Q |
12 |
atggacatcaacttcccagcaatcaattttcctagaaactaaagccaacttctttatgaaactcataaattgaannnnnnnnnnnnnnnnnnnnnnaatc |
111 |
Q |
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| T |
44526114 |
atggaaatcaacttcccggcaatcaattttcctaaaaactaaagccaacttctttatgaaactcataaattgaatctctctcttcttctctctctcaatc |
44526213 |
T |
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| Q |
112 |
aagaaaagaataaaacccatgaattattattttttaacgttgatgaattttatcttttaatttattgaagaaaggaagatggaaaataaagaaggaagag |
211 |
Q |
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| T |
44526214 |
aagaaaagaataaaacccatgattttattttttttaacgttgatgaattttgtcttttaatttattgaagagaggaagatggaaaataaagaaggaagag |
44526313 |
T |
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| Q |
212 |
caccacaacggttatggtgcaccgccaccacttgtgcaagggttgccgttgagatgactttgtgagtgaggaagg |
286 |
Q |
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| T |
44526314 |
caccacaacggttatggtgcaccgccaccacttgtgcaagagttgccgttgagatgactttgtgagtgaggaagg |
44526388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 154 - 201
Target Start/End: Original strand, 9301990 - 9302037
Alignment:
| Q |
154 |
atgaattttatcttttaatttattgaagaaaggaagatggaaaataaa |
201 |
Q |
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| T |
9301990 |
atgaattttatcttttaatttgttgaagaaagaaaggtggaaaataaa |
9302037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 154 - 209
Target Start/End: Complemental strand, 49073310 - 49073256
Alignment:
| Q |
154 |
atgaattttatcttttaatttattgaagaaaggaagatggaaaataaagaaggaag |
209 |
Q |
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| T |
49073310 |
atgaattttatcttttaattttttgaagaaaggaagat-gaaaatagagaaggaag |
49073256 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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